Bneb013232.3
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000003.1:13784482-13786246[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.043 2.4 10.2 1.7 1 21 215 235 215 236 0.94 2 12 0.00015 0.0084 17.9 0.3 1 23 242 265 242 265 0.97 3 12 0.0083 0.45 12.4 0.3 1 23 273 295 273 295 0.96 4 12 0.0071 0.39 12.7 1.3 3 23 315 335 313 335 0.93 5 12 0.00012 0.0065 18.2 1.5 1 23 341 363 341 363 0.98 6 12 0.012 0.64 12.0 0.7 1 23 368 391 368 391 0.96 7 12 0.02 1.1 11.3 0.2 1 23 400 422 400 422 0.97 8 12 0.11 5.9 8.9 4.3 1 23 427 449 427 449 0.98 9 12 0.00011 0.0059 18.4 0.5 3 23 455 475 454 476 0.96 10 12 0.019 1 11.3 0.3 2 23 483 504 482 504 0.97 11 12 8e-05 0.0044 18.8 0.1 1 23 510 532 510 532 0.98 12 12 0.0032 0.17 13.7 5.2 1 23 538 562 538 562 0.97
Sequence Information
- Coding Sequence
- atggATCCGAACATaatttcaactttggaaataaAGATGCTTTGTcgtgtttgtttaaaaatatcgcCAACTAAGTCTTCCATCTGGGACACaacatttgtaaaaaatatgggCAACATTCAATTTGTAGGAATGATTATGGAGTGTACTTCGGTTATTgTCGAAAAAAATGATGATTTTCCAGAATATATTTGTTTTGATTGCTCGCAACAGTTAGTAAATGCTTACTGTTTTAAACATCAGTGCGAAAGGtcagatttaaatttaaagcatatttttgaaaatttgaaaatttctggtaaattttgtaaatacattccaaatgaaaattttagtaatttgtcATATGTAAAAGTTGAAAATGAAAATCCAGGAAATGACTTAGAAATCATTGAAAAAATAACACATAATGAAAACCAGCTAATAAAAAACGAAGAATTTATATGTAAAGATGAAATCGAAGAATTTTATTGGGATACAAATGAAGTGGAAGATGACGTTACACCAGAATCAAAAGAAGGTGTTATGTCAGAATCTGATGAATGTGATGTCACAGAATCAAATGAAAACTTCCCAAAAAATTCcattgaaattaaattagaattaGAAACTTGTGCGTCAGTTGAtgatttttcatcaaattttatttgttcttaCTGTTTGAAGAAATTCGAAATTAAGAAGAATCTgaatttacacaaaaaattctgtaaaaaaagaCATTTCATTTGTGATAagtgttctgaaaattttcccAGTCAGTCCCTACTTAATATACATTTGACAACATCCCATAGAGAGGTATCTGCGCCACTTTATACCTGTGATATCTGTAATGGCGATTTCAAAGAAAAATCGTTATTAATTGAACATTTCTACATTCATATCGGAACCTCGTTGTACTTCAGTTGTGATTTTGATGATAATACAGAGATACATTTATGTTATGCTTGTGACAAAAATTTTGCTTCATCCCAAGAATTAATTAAGCATTATGATCGACACAATgagaatgaaaattatcaatgtCGGAAGTGTAACGAAGCCTTCAAGAATAttgatttattcaaaaaacacgTAAGAGAGCATGGAATTCTACCTTATTTTTGTGATATttgtcttttaaattttgatagttTAAGACAACTGCAAATGCACCAAAAATATCCACATAAATATTCAATAGCTAAAGATACATTTAACTGTCCACTCTGTGAAGAAGATTTTACGGGTCTGCCTAGGTTGAAAAATCACTTGAAAGAGCACGAAGTtgatttatataaatgtttagaatgttttaaaTCCTGCAACTCAGTTGTTGAGTTTAAGAATCATAAGAAGGAACATAATGTCTGCAATTTATGCCCTGAATGTGGGAAACAATTTTCTCTGGTTAAGTCTTTGTACGCTCATATTCGAATACACCACAGGAAACTGACTCAAGTCACCTGTGACGTATGTAATAAAACCCTCCTTTCACCAACAAGCTTGAAAATACACAAACGAATTCACACCAACGAAAAACCGTACATTTGTTCGTACTGTCCATATCGGGCAAGAAATTCGGGTGACTTAACGGTACATATTCGTGTCCACACCGGCGAGAAACCCTATGTTTGTCAGTTTCCAAATTGTGGTCAAAGGTTTAAAACGTCTAGTCATCGAATTAAACATCATCGACTACATACAGGTGAACGCAACTAG
- Protein Sequence
- MDPNIISTLEIKMLCRVCLKISPTKSSIWDTTFVKNMGNIQFVGMIMECTSVIVEKNDDFPEYICFDCSQQLVNAYCFKHQCERSDLNLKHIFENLKISGKFCKYIPNENFSNLSYVKVENENPGNDLEIIEKITHNENQLIKNEEFICKDEIEEFYWDTNEVEDDVTPESKEGVMSESDECDVTESNENFPKNSIEIKLELETCASVDDFSSNFICSYCLKKFEIKKNLNLHKKFCKKRHFICDKCSENFPSQSLLNIHLTTSHREVSAPLYTCDICNGDFKEKSLLIEHFYIHIGTSLYFSCDFDDNTEIHLCYACDKNFASSQELIKHYDRHNENENYQCRKCNEAFKNIDLFKKHVREHGILPYFCDICLLNFDSLRQLQMHQKYPHKYSIAKDTFNCPLCEEDFTGLPRLKNHLKEHEVDLYKCLECFKSCNSVVEFKNHKKEHNVCNLCPECGKQFSLVKSLYAHIRIHHRKLTQVTCDVCNKTLLSPTSLKIHKRIHTNEKPYICSYCPYRARNSGDLTVHIRVHTGEKPYVCQFPNCGQRFKTSSHRIKHHRLHTGERN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00239614;
- 90% Identity
- -
- 80% Identity
- -