Bneb013770.2
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- Prdm14
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000003.1:30937525-30939073[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00036 0.02 16.7 4.6 1 23 210 233 210 233 0.98 2 10 0.011 0.59 12.1 1.7 2 23 240 261 239 261 0.96 3 10 9.1e-07 4.9e-05 24.9 1.9 3 23 268 288 267 288 0.97 4 10 0.00018 0.01 17.6 1.6 2 23 295 317 294 317 0.96 5 10 3.6 1.9e+02 4.1 0.3 2 9 328 335 327 336 0.88 6 10 0.00025 0.013 17.2 1.6 1 23 353 376 353 376 0.97 7 10 4.7e-06 0.00026 22.7 0.4 3 23 387 407 386 407 0.99 8 10 0.0007 0.038 15.8 3.0 1 23 413 435 413 435 0.98 9 10 0.016 0.86 11.6 0.7 3 23 443 463 441 463 0.96 10 10 6.9e-05 0.0037 19.0 1.7 1 23 469 491 469 491 0.97
Sequence Information
- Coding Sequence
- ATGTCCCTTAAAAAATCAGACTTTCCAAAAATTTGTCGTATGTGTCTACTGTTTAAAGATGATATGCTAATTTTGCATGTACCAGAAGTTCTCCAAATGATACAGTTTTGTGTTGATATTGAGGTCCGTTTAAACGATGGATTCCCACAGACTATATGCACCGAATGTTTCAACCAGATGCACCAGTATTCAATATTTCGTCAACAATGTAAACATTCTgatgaaattttacataaaataattattaatgataatgaaaataattcacTCATAAATAATGTTCAAGAAACTATATTTATCTCGCTAAATGACTCAAATGTTAAAAAAGAGTTTGTAGATTGTAAAGTTGGACCTTTTGATAATGAAGTAGATTCTATAAAAGTTGAACCTATCGATAATGAATTTAACACAAAAGATTCAATATCTACTCACGGACTAAATAAAATACAAGGTCCCTCAGAGTCTAGTTTGttgttaaaaaaagaattgaaagaCACGTGTGAAAATGACCAGTCAATTCAAGAAGAAAACAAATCTTtaaaaagagagaaaattaaaaCCGAAAATAACTCAATCcctgaaaataaatttgaaaatcgtATGAAACGACGCCATCTTGAAAAGAAACATAAATGTGACCAATGTACCAAATCATTCGAAAAACCTTGTGAATTAGCAAAACACTTACAAACCAcacatcaaagaaaagcaaatTTGGAATgccaaatatgtaataaaaagtttcatttaCAAATTCAACTAGATTTACATCTAAAATCGcattcaaaaagtaataaaatctGTAACACGTGTGGTAAAGAATTTAAAGATCGTTCAAATTTACGACGCCACAAAAAGATCCACGAAAAACGCGAAACAATTTATTGTGTTCATTGCGGTAAAACGTATATGAACGAAATATACTTAAAACGGCACATAAAACGTAGCCATAACACAGAATCAAGcgcaaaaaggaaaaaagtatGTCCCATATGCGGGAAAGTCGTCTTAAACGTTAAAATTCACACAATACAAACACACGACAAACACAAACCGTTCAAATGTAATCAGTGtaataaatcatttatttttaacgcCGTGCTTGTTAAACACACTCGCGAGAAACATTTAGGCGTCAAAAAGGAAACGAAAGCTCTCTGTCCAGTTTGTGGGAAAGCTTGTCCAACGCAGGGTGATTTACGAAAACATTTAATGACACATGATCAAAGTCGAAAATACAATTGCCACTTGTGTAGTAAAACGTACAAGTATAAATTGGGTTTACAAAATCATTTAATGGTACACAAGGGAATACGACCGTACGGTTGCCCATCTTGTACAAAAAGGTTCTTTTCGAAACAAAAATTGGAATACCATTTAGTGATTCATACGGGCGAGCGACCATTCGCTTGCCAGATTTGTGGACGCCGATTTAACCACGAATCCGCCAGACAAAGACATTTGAAAATTCatagtttttga
- Protein Sequence
- MSLKKSDFPKICRMCLLFKDDMLILHVPEVLQMIQFCVDIEVRLNDGFPQTICTECFNQMHQYSIFRQQCKHSDEILHKIIINDNENNSLINNVQETIFISLNDSNVKKEFVDCKVGPFDNEVDSIKVEPIDNEFNTKDSISTHGLNKIQGPSESSLLLKKELKDTCENDQSIQEENKSLKREKIKTENNSIPENKFENRMKRRHLEKKHKCDQCTKSFEKPCELAKHLQTTHQRKANLECQICNKKFHLQIQLDLHLKSHSKSNKICNTCGKEFKDRSNLRRHKKIHEKRETIYCVHCGKTYMNEIYLKRHIKRSHNTESSAKRKKVCPICGKVVLNVKIHTIQTHDKHKPFKCNQCNKSFIFNAVLVKHTREKHLGVKKETKALCPVCGKACPTQGDLRKHLMTHDQSRKYNCHLCSKTYKYKLGLQNHLMVHKGIRPYGCPSCTKRFFSKQKLEYHLVIHTGERPFACQICGRRFNHESARQRHLKIHSF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -