Bneb011821.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- ZNF131
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000002.1:46311971-46320056[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.01 0.54 12.2 3.1 1 23 107 129 107 129 0.98 2 11 0.00023 0.013 17.3 3.9 2 23 138 159 137 159 0.96 3 11 0.00087 0.047 15.5 1.3 1 23 177 199 177 199 0.97 4 11 4.6e-05 0.0025 19.6 4.5 1 23 230 252 230 252 0.98 5 11 6.8e-05 0.0037 19.0 2.0 2 23 261 282 260 282 0.96 6 11 3.6 1.9e+02 4.2 0.5 2 12 295 305 294 314 0.83 7 11 8.2e-05 0.0044 18.8 2.1 1 23 319 342 319 342 0.98 8 11 0.086 4.7 9.2 2.8 3 23 353 373 351 373 0.90 9 11 0.00091 0.049 15.5 2.0 1 23 379 402 379 402 0.98 10 11 7.5e-05 0.0041 18.9 0.5 1 23 410 432 410 432 0.96 11 11 1.8e-05 0.00099 20.8 0.9 1 23 438 460 438 460 0.98
Sequence Information
- Coding Sequence
- ATGACTGATGATCCTGTAAACATAAAGATCGAACAAGATACAAAGACAGAGTATGTTGATTTAATAGAACCAAAAAGTTATGACAGTGCTATTGATTCTGACGATATTAAAGTAGACACGGATTTGTTAACGCCAAACATTGATTTAAAAGAATCTCAAAGTGATGAAGATATTACTGAGGATCCGGACGATACAAAAGCCTACACAGTAAAGGAAGAAAATGATCCCTTAGATCAAACCGTAACCAAAGAATCGCTCTCGTTAAATgtaactaatttatttaatcaGCATGTAGCCAAACTTGAAGGGGACGGTGGCTATCGATGTAATTTATGTGGCAAAGAATCCAAACTGCGTTGCAATATGAGAAAACATGTAATGTTACACATTCCAAAAGAACAACGAGTCAAATATTGTAAAatTTGTAAAAAACGTTACACACGAAAGGATTCGTATTTGAAACATTTGAAACAACACGAGAAAGACATTTTAGAACATAAAGTCGATGGACTCGAGGAAgttaaaatatatcaatgttCTGAATGTCAACGATTATTTGAAACTGAGGAAGAGTTAGAAAAACACAAATTCAAACATTATGTGGAGAAGTTTAAAAATTCAGCACAGTTTGCCAACAATAAAGCAGAAGATAATTCTACCGAAACAGATGTAAAAGccgaaaaaaaacataaatgtccTCAATGTTCGAAATCATTCGATGCTTTATATAATCTACGAAGGCACATACATACGCATATTCCGGCTCAACAAcgtgaaaaatattgtttgtattgTGACAAACGATACATCAATCAAGATAAATATCAACGGCATATGAAActacacaaaaatataaaaagtgcTATTATAAAACCCAAAATACCATGTGAATTGTGTGGAAAAAGTGTAACCTCTTTACCGGATCATATGCGTAACGTTCATCGTGAAAGAAAGTACCAATGTCCCGAATgtgatcaaaaatttttccacgAATTTCGATTAAAAAGGCATATTAATATCGTTCATAGAAATATGAAAGTTAAAAAACACCTTCTATGTCCTCAATGCGGTAAAACGTTTGGTAGTTATAACCATTTTCAATGCCATCTAGCGGATCATGAGGGTAGAAAATTGTATAAATGCGACATTTGTAATCTGGAATTTAAGTTTGATTCGCCGTATCGTAAACATATGAATAAATATCATTATAATAATGTAGTTAAGAATTTTAGTTGTGAATATTGTGGTAAAAAATTTGTATCTAGACAATTAGTACAAAATCACCTTGTGGTTCAcaccggtgaaaaaccgtatgcGTGTAAGGTGTGCGACAGACGAGTTTCACATCGAGGAGCACTATGGACTCATATGAAAACACATAATgtgcaaaaataa
- Protein Sequence
- MTDDPVNIKIEQDTKTEYVDLIEPKSYDSAIDSDDIKVDTDLLTPNIDLKESQSDEDITEDPDDTKAYTVKEENDPLDQTVTKESLSLNVTNLFNQHVAKLEGDGGYRCNLCGKESKLRCNMRKHVMLHIPKEQRVKYCKICKKRYTRKDSYLKHLKQHEKDILEHKVDGLEEVKIYQCSECQRLFETEEELEKHKFKHYVEKFKNSAQFANNKAEDNSTETDVKAEKKHKCPQCSKSFDALYNLRRHIHTHIPAQQREKYCLYCDKRYINQDKYQRHMKLHKNIKSAIIKPKIPCELCGKSVTSLPDHMRNVHRERKYQCPECDQKFFHEFRLKRHINIVHRNMKVKKHLLCPQCGKTFGSYNHFQCHLADHEGRKLYKCDICNLEFKFDSPYRKHMNKYHYNNVVKNFSCEYCGKKFVSRQLVQNHLVVHTGEKPYACKVCDRRVSHRGALWTHMKTHNVQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -