Bneb015063.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Brachynemurus nebulosus
Gene Symbol
-
Assembly
GCA_035578155.1
Location
JAPWDM010000003.1:76163717-76173485[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.00031 0.017 16.9 1.6 1 23 966 988 966 988 0.98
2 10 0.00027 0.015 17.1 0.4 1 23 996 1018 996 1018 0.98
3 10 6.6e-05 0.0036 19.1 1.2 1 23 1031 1053 1031 1053 0.99
4 10 3.4e-06 0.00018 23.1 0.6 1 23 1056 1078 1056 1078 0.98
5 10 0.0016 0.089 14.7 2.4 1 23 1141 1163 1141 1163 0.97
6 10 0.00025 0.014 17.2 0.8 2 22 1167 1187 1167 1187 0.95
7 10 0.011 0.6 12.0 7.4 1 23 1246 1268 1246 1268 0.99
8 10 0.00012 0.0067 18.2 1.6 2 23 1348 1369 1347 1369 0.97
9 10 0.0052 0.28 13.1 0.4 2 23 1375 1397 1375 1397 0.91
10 10 0.034 1.8 10.5 0.3 2 22 1404 1424 1404 1427 0.89

Sequence Information

Coding Sequence
ATGGCAGAAGGACATGTTTTTTTCGTTGATAAAAATCCGGACGAAGATGGTGTGGTTGATAGCGACATGGTTTGGCAGGATACATACACGGAAATTGTCGCGTACGAAGAAAATATCGAGGATAACAGTCAATTGAATGTGGTTTATGTAACAGAGGATAATATTAGTACAAATGAACATTATGTGTCAGCGGTCGAGGAAGATAGTTCACAATATTATTCGGTTATGGAAACCACCACAGACACGTCAGTGGCCGAACAGTCGAATGAAACACCAAAAGTTGTTGAAGAAACTGTCGATTCCGCTCAATTGACACTTGACAGTGTTGAACCGAATATATCAGTTATTGAATATCCTTCGGAAACGGTTGTTCCTGATGATAATTTTAAAGAGGAGCATGTAGATAAAAGTGCAAAGGTTGAAGATGGTGAGGTGGTAGAAAGTGCCGAAGATGATGATCAGGTCACATTGTATAAAATTGAGGACTCAAATGAATTATTTGCCGTGCAAATTGCCAGAGATGCTGATGGGAAAATTCACAAATATCAGTATAAAGTCAgACAAAATGAAGATGGTCAACTGGAAGCTGTACCGGGCACCATTCAGATTCAACCGGAGGGTACCGATCAACTAATCTGCGAAGAACAGGAgattaaagaaaatatagttGAAGAACAATTAACAGAACAGCTACCCGAATCTGTAGAACCTGAACCTGTAGAACAAAACCTTGAAttaaatgacaccaaaaatgaCACTACGCAATATTTGAAATCGGAAATCACCGAAGAAATTATAAATGAGGAAATTGCGTCATCAACACTGTACGAACACGAGGAATCAACCAACGAGATGGAAATTGAAAGTCATTACGAGGAAGAGGTGATTGACGAAGGCAACAAGGAACACAGTAACGTGGAATATTTGAAAGAAGACCGACAAGAAGTTCCGGCTGAACAAATCACCGAAGAAACTTACTACGACGATAACGAGGAACTTGAAGAATTCACAAACGTGGAATATTTACAGGAAGACTTCGAAGATGATGACGAAAATCAACAGACCTATGAAAATCTTGAAAATACTGAAGataaaagtaaagaaaatgCAGTGATTGAAGAAAGCATTCAACAACCACTCGCGCAAAAGAAATATGCCGAGGGAAGTCAAATACAAGTGCTATCGGATGTCGTCTTAAACGAAAACCGCGACAATAACAACGCTAATGTTGCAAAACCGAAACCCTacgttataaataataattcgcAAAAACATTTACTAAACAAAATCTCCGACTTGTCATTCTTAAACGAAAATATCGAATTGAAACAGATATCAAATCCAACGGCCAACAGAAGTAATAAATTAACGTTCCTAATTGTGACGCAACCAGTGGCGCCACAACATCAACAACAAAAACCAACCCTCGTACGAACCGCTCCAATTCAGCCAAGCAAAAAATTCCGTAGTATATTAAGGCCAAGCATATCAACCATCACAAAACCCATTAATCAACCGTCAAAAAATACCATAAAAACTGTAAAACCAGAACATCCAACAAATCCAACGCCTCACACCACCAAAATGTTACTGCTTAATAACGTAATGACTGGCAAAACTTCACTACAGACCCCCTTAATCAATAAAGGTGTACGACAACCTCGAAAACAAGTCATTACACCAGTTGACCGGGTGGGCTCCGAGATAATAATCCAAGCACCCGAGGAAAAGGCAGTACCCGTTGAAACACTGGACCTGGACGACTTGAGCGACAACGAATATTCACCAAAATCCAAAACAAAAGTCAAGAAAGTCCTGCCGAAAAAACGTGGACGAAAACCAGCGTGGGCAAAACCCGCTGAAACCGCTAGCACACAAGATCAAACAACACCCGATCAAGCTACAGAACCCGCAACAGAATCAAACGAGAAATCGATTAAAACAGAGACACAAGATCAAACACAGAGTGTTGTTAAAACAGAAGTCCCCGACAAGTCACAGCCACCGCCGAAATATACATTACCGCCGAAAAAGCGGGGTCCTGGACGACCAAAATTATCCGAACGAAAAACCAATTTCATTGAAAAAGAAATCATTGAACACGCCAAAACTGAGAACGGCACCCCGAACTCACTGAGGAAACGTGGCCGCCCAAAATTAATCCGTACACAGCGCAAATACACCAACGTAAAACTCACCAGTAAAGTGAGCGAGtcaaaagaaaacaaagaaaCACCGAAAACATCAAATGAGGAAAATGTAACACCACGAAGGCGTGGTCGTCCGCCCAAAAAGCCACCGCTAATCCCGCCAAACTCGCCTAAACTAAAGGAAGAACAACCGTCAAGCCCGCAAATTAACGAAGATATAAAACTCGAAAATGAGCCGGCAAATTCCAGCGCAGACAGTGAAACTGAAGACAAACAACCAGCGccgaaaaaatccaaaactgacataaaaattgataaacaaatGGACAGTATCATGAACGAGATGGATGGCATCCATGGCGGCAGTAACGACGACGATGACATACCGATGATCGAGGAACACCTCGAAAGTGATGCAGACGATGAAAATGCTAAAAAGGAAACGCTACTTTCCATACTGGAAACACCAAACGAAAAATCAACCGCGCCCGATAAAGAAGATGTGTTGACGCGGGCACTTAAAGACGccaatattttaaatcaatcaGACGGAGAGGAGGGGGAGACAAACCTAACCAATCAAACAACTTCCCAGGTTCCTTTTTTAGATTCAGCTGAATCAAAAACGTCCGAACCACCACCACCACTACCGCCCCCTGCCCCAACCGCTGAAAAAAAGGACGCGATTGATTcgaaaaataatacaattaaaaaaaatacggacTCAAAAAACAATTTAGAAATCTATAAGTGTGTTAAGTGTGCAAAAACATTCTCAAACTATTTAGACTTAAAAACGCATATGCAAGAACATAATTCACTGATTAAAGGTAAGTTTAAATGCAATAAATGCCCTCGTATATTTACATTAGAAAGTGCATTAAAGATCCACGAAAAAATCCACGGTGACGATACAAAATCAACAACTCGATCGGGCACGTTTAAATGTGTACAATGTTCAAGATCGTTTACCGCCTTATCGCAGCTGCGCGCGCATCAACAAAcgcataaaaatttcaagtgtgACAAATGTCCGGAACGTTTTAGTACACGAAGTCAACTTCTTATACATATTCGAGGTCACATTAAGGATAATCTAATAAAAACAACGCTGACCGCGAACAATATATCACGGAAATTACGTAAAAGTACCCAAGACAAAACCGAATTCAGTGAAATAATTCGAAGCGTTGAAAAAAATAAGCCACGCAAAACATTAACACCATCCACCAATAAGCGAATAAACTCTGATTTATCTTTGCAAAATATTCACAGGTGCAACGTATGCGCAAAAACATTCAGACAGCTAGCACACTTGGTGATGCATCGGGAGGTACACAATAAACCCACGTGCGTTAACTGTGGCAAAGTGTTCGCATTCAAACATTCATTGAACGAGCACATGCGCAGATACTGTCTAAAGTCCAGTTCGCCAAAGAATCGAAAATCACTAAACAATTCCACGCTCAAACGCAAATCACTCAATCAAAAAGAGACCACCCTCGTACTCAAACGACAGACCATCCATAGTGTCCCCACCAGGGATGCCAACACCAACGCCATTGCCAATGCCAGCACCGCCAACTACAAATGTAAATATTGCGATAAAAAATTCCGCAGCGAAATATTCTGTAATAAACATATGAAAACGCATAACACCGacgaaaaatcaataaataacaATCACGGAACTACTGCGCAGACAGTTATCAAAAAATGTTATGTACCACTGGTGGATGCCACACGGACATCACACGAGCAACCGAACAGTGCCATTCAAACAAATCGAGAGCCGAGCGCGAAACGAGCGACAATAGGTACACTGGCACCAATCGTTGAACGGCGACAATCGGATCGGAAACAAGTGCCTAGTAAAAAAGTAATGGCGATCAGATGCGACATGTGTAATCTGAGTTTTACCACGTACACGGGCCTGTTTAGACATACGCGAACTCATCCAGacataacagaaaaatgtgatttttgCAATGCCGGTTTCGAAACTAAAGAACTCCTCAAGAAGCATATGGTCGACGAACACTTAAAAGGGGACGTAAACGAATGCGGCCAGTGTCAACAGTCATTCGACACCGAAGAAGAACTCAACAACCATAAAATAAAGAGTGGCCACGATATTCGCTCGCCAAAAATTGAAGCCAATCTGTTATCGTCGATCAGAAAAATGAATATGGCCCGAAAAGCGATGCACAGTGGTATCCAATTtcatttcaaaacaaaaaataataaattgaaacggaaattatag
Protein Sequence
MAEGHVFFVDKNPDEDGVVDSDMVWQDTYTEIVAYEENIEDNSQLNVVYVTEDNISTNEHYVSAVEEDSSQYYSVMETTTDTSVAEQSNETPKVVEETVDSAQLTLDSVEPNISVIEYPSETVVPDDNFKEEHVDKSAKVEDGEVVESAEDDDQVTLYKIEDSNELFAVQIARDADGKIHKYQYKVRQNEDGQLEAVPGTIQIQPEGTDQLICEEQEIKENIVEEQLTEQLPESVEPEPVEQNLELNDTKNDTTQYLKSEITEEIINEEIASSTLYEHEESTNEMEIESHYEEEVIDEGNKEHSNVEYLKEDRQEVPAEQITEETYYDDNEELEEFTNVEYLQEDFEDDDENQQTYENLENTEDKSKENAVIEESIQQPLAQKKYAEGSQIQVLSDVVLNENRDNNNANVAKPKPYVINNNSQKHLLNKISDLSFLNENIELKQISNPTANRSNKLTFLIVTQPVAPQHQQQKPTLVRTAPIQPSKKFRSILRPSISTITKPINQPSKNTIKTVKPEHPTNPTPHTTKMLLLNNVMTGKTSLQTPLINKGVRQPRKQVITPVDRVGSEIIIQAPEEKAVPVETLDLDDLSDNEYSPKSKTKVKKVLPKKRGRKPAWAKPAETASTQDQTTPDQATEPATESNEKSIKTETQDQTQSVVKTEVPDKSQPPPKYTLPPKKRGPGRPKLSERKTNFIEKEIIEHAKTENGTPNSLRKRGRPKLIRTQRKYTNVKLTSKVSESKENKETPKTSNEENVTPRRRGRPPKKPPLIPPNSPKLKEEQPSSPQINEDIKLENEPANSSADSETEDKQPAPKKSKTDIKIDKQMDSIMNEMDGIHGGSNDDDDIPMIEEHLESDADDENAKKETLLSILETPNEKSTAPDKEDVLTRALKDANILNQSDGEEGETNLTNQTTSQVPFLDSAESKTSEPPPPLPPPAPTAEKKDAIDSKNNTIKKNTDSKNNLEIYKCVKCAKTFSNYLDLKTHMQEHNSLIKGKFKCNKCPRIFTLESALKIHEKIHGDDTKSTTRSGTFKCVQCSRSFTALSQLRAHQQTHKNFKCDKCPERFSTRSQLLIHIRGHIKDNLIKTTLTANNISRKLRKSTQDKTEFSEIIRSVEKNKPRKTLTPSTNKRINSDLSLQNIHRCNVCAKTFRQLAHLVMHREVHNKPTCVNCGKVFAFKHSLNEHMRRYCLKSSSPKNRKSLNNSTLKRKSLNQKETTLVLKRQTIHSVPTRDANTNAIANASTANYKCKYCDKKFRSEIFCNKHMKTHNTDEKSINNNHGTTAQTVIKKCYVPLVDATRTSHEQPNSAIQTNREPSAKRATIGTLAPIVERRQSDRKQVPSKKVMAIRCDMCNLSFTTYTGLFRHTRTHPDITEKCDFCNAGFETKELLKKHMVDEHLKGDVNECGQCQQSFDTEEELNNHKIKSGHDIRSPKIEANLLSSIRKMNMARKAMHSGIQFHFKTKNNKLKRKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-