Basic Information

Insect: Brachynemurus nebulosus
Gene Symbol: -
Assembly: GCA_035578155.1
Location: JAPWDM010000001.1:21800710-21826884[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.18 10 8.2 0.2 2 21 212 231 211 234 0.88

2 11 3.9e-05 0.0021 19.7 4.8 1 23 240 262 240 262 0.99

3 11 5.9e-05 0.0032 19.2 3.4 1 23 268 291 268 291 0.96

4 11 1.8e-05 0.00095 20.9 0.4 2 23 300 322 299 322 0.95

5 11 7.3e-05 0.004 18.9 0.9 1 23 331 353 331 353 0.99

6 11 0.27 15 7.7 0.2 2 21 418 437 417 440 0.88

7 11 0.0044 0.24 13.3 6.7 1 23 446 468 446 468 0.99

8 11 1.6e-05 0.00087 21.0 2.3 1 23 474 497 474 497 0.96

9 11 0.00038 0.02 16.7 2.7 2 21 506 525 505 528 0.94

10 11 6.2e-05 0.0034 19.1 3.6 1 23 533 555 533 555 0.99

11 11 0.0047 0.26 13.2 0.7 1 23 562 585 562 585 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.18	10	8.2	0.2	2	21	212	231	211	234	0.88
2	11	3.9e-05	0.0021	19.7	4.8	1	23	240	262	240	262	0.99
3	11	5.9e-05	0.0032	19.2	3.4	1	23	268	291	268	291	0.96
4	11	1.8e-05	0.00095	20.9	0.4	2	23	300	322	299	322	0.95
5	11	7.3e-05	0.004	18.9	0.9	1	23	331	353	331	353	0.99
6	11	0.27	15	7.7	0.2	2	21	418	437	417	440	0.88
7	11	0.0044	0.24	13.3	6.7	1	23	446	468	446	468	0.99
8	11	1.6e-05	0.00087	21.0	2.3	1	23	474	497	474	497	0.96
9	11	0.00038	0.02	16.7	2.7	2	21	506	525	505	528	0.94
10	11	6.2e-05	0.0034	19.1	3.6	1	23	533	555	533	555	0.99
11	11	0.0047	0.26	13.2	0.7	1	23	562	585	562	585	0.94

Sequence Information

Coding Sequence: ATGGGCACCAATTGCTATTTATGCCGACGAAAAGTATCAAAGCGTGACCGAATTTCATTACACAAGTTCCCGAAAAATCCAATATTGAGAAATAAGTGGATAGAAGCTTGTGATTTATCACTCTCCGATAATCTCACGTATATTTACATTTGTTCACTGCATTTTCGTCCTCAAGACATAGACAGAGGACATGAATTTCGAAGCAGATGCATTTTAAGATCTGGTGCAGTTCCATTAATTGGTGTACCGAATTCAATGTATTCCAattccaacaataaaaatagaaatattgtAAATGGTGAAAGTGATAATACTGATAATATTGTTGAAGCTAATGAAGTTGAAATGATCAGTGAATATCAAAATGGCAATAAGTTAGATACTGTAGTTCTAGACATAAGCacatttaataatgtaaatgcaaattttcacacatttaataataatattgtcaTTTTTCAATTAGTGGATACACATATCCAAGAATTACAACTGCCTACCAATGCATCCAATGAAGTTGCGTTTGAGCACGGTAACGGTTTCATACAGCCACATCGGTTGGATACAAAAGATCCCACTGTAGATAGTCAAGTGGATAGACATTTTGAGAATTTTTGGAAAGATTTTACGTGGCCTTgtaataaatgtcaaaatgaaTTTGAAACCCGAAAGGATTTAGTAGATCACTTTGCAGATGTCCACGGTGGATCACCAGAGTACAAGTGTCCGGAATGTTCAAAATGCTACACAAAATATTCGATGTTTACTCAACATTTACGGGTGCATAAGAACTATCAGAAATTCAGTTGCCACATCTGCAGTAAAGCATTTAATGTTAATGCCCACCTTCAAAAACATTTGAATCTTTACCACGAACAAAATCCACTGGCGAAAAAAGTGTGTCAAGAATGTGGAAGAGCCTTTAAAAGTCAAATTTCACTCCAGTATCATATGAAATACGCTCATGGGCCCGCTGATGAAAATTCGAAATACGAATGTGATATTTGTAACAAGAAGATCACGACTAAAGCTGGTTTAAAGACTCATAAAAATACTCACGATGaaatctcTGCTGAACTTTTTGATGATAACTCATTATCGCCAGCATCAGAACCGTTTAATTCGAGAGAAGATATTCAAGAACTTGAATTAAAAACCGAAAACGATCAGAAAGCAACGGATAATACCAAGAAAACTTCTGGTAGAAAACCTACCAAACAGTCGATTGATATTTGGAAAGACTACAAGTGGCCTTGCAGTAAATGTGAAAATGAATTTGGAACACGACAGGACTTAACATCCCACTTTGAAGACGTTCATAGTGAACCGCCAGAATATAAATGTCCAGAATGTTCAAAATGTTATCcgaaatataaaacatttactcagcaTTTTCGAAAACATCGAAACTATCAGAAATTTAgATGTCATCTCTGTGATAAGGCGTTTAACGACAGCGCATATCTACGGACACATTTGAATTTGTTTCACGAACAAATTCCGATTGTTAAAAAAGTATGTCAAGTTTGTGGCAAGGATTTTAAAACTTCCACCTCACTTAAATATCACATGAAATGTGTCCATGAAATATCGAAGTATGAATGTGATATTTGTCATCGGAAACTTACCACGAAAAGTAGTTTACAGGAACATAAAAAGACTCATgatgAATCCACTAAAACACACATTTGTGATCAGTGTGGTCTTGGCTTTAGATTGAAAAATTCGTTAAGATATCACATCGAAAATATACACGAAGGTATTAAAGAGGAAAATTATCTACAGTGTCCTTTGTGCCCTAAAAAGTaa
Protein Sequence: MGTNCYLCRRKVSKRDRISLHKFPKNPILRNKWIEACDLSLSDNLTYIYICSLHFRPQDIDRGHEFRSRCILRSGAVPLIGVPNSMYSNSNNKNRNIVNGESDNTDNIVEANEVEMISEYQNGNKLDTVVLDISTFNNVNANFHTFNNNIVIFQLVDTHIQELQLPTNASNEVAFEHGNGFIQPHRLDTKDPTVDSQVDRHFENFWKDFTWPCNKCQNEFETRKDLVDHFADVHGGSPEYKCPECSKCYTKYSMFTQHLRVHKNYQKFSCHICSKAFNVNAHLQKHLNLYHEQNPLAKKVCQECGRAFKSQISLQYHMKYAHGPADENSKYECDICNKKITTKAGLKTHKNTHDEISAELFDDNSLSPASEPFNSREDIQELELKTENDQKATDNTKKTSGRKPTKQSIDIWKDYKWPCSKCENEFGTRQDLTSHFEDVHSEPPEYKCPECSKCYPKYKTFTQHFRKHRNYQKFRCHLCDKAFNDSAYLRTHLNLFHEQIPIVKKVCQVCGKDFKTSTSLKYHMKCVHEISKYECDICHRKLTTKSSLQEHKKTHDESTKTHICDQCGLGFRLKNSLRYHIENIHEGIKEENYLQCPLCPKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00239095;
90% Identity: iTF_00239095;
80% Identity: iTF_00239095;