Bneb013126.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- prdm10
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000003.1:10086538-10100176[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0014 0.077 14.9 1.8 2 23 556 577 555 577 0.97 2 12 0.039 2.1 10.3 0.7 1 21 648 668 648 670 0.89 3 12 0.0004 0.022 16.6 0.2 1 23 687 710 687 710 0.93 4 12 5.7e-05 0.0031 19.3 1.3 2 23 722 743 721 743 0.98 5 12 0.079 4.3 9.4 3.2 2 23 752 773 751 773 0.97 6 12 0.00017 0.0091 17.8 0.6 1 23 780 802 780 802 0.98 7 12 0.00021 0.012 17.4 2.5 1 23 808 831 808 831 0.97 8 12 0.00031 0.017 16.9 1.4 1 23 836 858 836 858 0.97 9 12 0.00022 0.012 17.4 2.5 1 23 864 887 864 887 0.94 10 12 0.0096 0.52 12.2 1.7 1 23 930 953 930 953 0.97 11 12 0.00087 0.047 15.5 2.2 1 23 975 998 975 998 0.97 12 12 0.026 1.4 10.9 5.0 1 23 1034 1057 1034 1057 0.95
Sequence Information
- Coding Sequence
- ATGGAGAGCGGCAGCCCAGGCGTTGATGCGGATTCTAAACCGTTAATGCTTCCTGGCGATATGTGGTCGTCACCGGAGCCAACTATACGTGCAACAAATGATCAATCGCAGGATGCAGCACATAATCCACAGCTTTTATTTATCGCTGTGGAGTATGTCAATGATGGTAACGTCAACTACAATAATTTGAATACATCATCTTTTGCCCCGGCACAAGAATTTTCCGATTTAGACGAACATCTAAGCCCAATTGATTCGTCAAATATCACGTCGACAAATCAGTACTCCCCGAATGTTTACTCAATCAATAACAACGAAACAAACTTAGCCAATTCGCCTTCCTCCACGTACAATGACAACTCCTTTGTTATTCTATCAAATAATTCCGAACAAATCGCCCAACCGCCGAACGGTTTCTCATTGAGTTCGGTCGatggaaatttgaatatatttcgTCAAGTAGTTACGAATCGACTATGTCGACAAGTAGACAGTGTTGATAGCGATTTGAAAGAAGAGAATGAACCGGTGGAATTGTTGATCACGGACCAAGATACTGGAATTGCGTACTCTTTGAGCCAAGAAAATAGTCTGGCCGAACAGCAAGATATCAATCGAATATTAAGCAATCTGGACCCCACCAGTGGTGATGTACGTTTACGTTTAGCTGAAGATCGTCTATTAGACTCACAGAGTCTTGTACTCGACTCAAATCATTTGATTTCGTTGGAAGATCACGTTTTGATGGATAATGGAACGTTGGTATTGAAATCTGATTTACCGGCCGATTTAAACGGTATGGTTCAACACATcgatttaaatagtttagatCCAAACATGTCGACAAACATCactgaaaactataaaaatataactgattCTTATATGGAGGATGATAATGTTGAAGATAATAATCTAAGCGAAATCATCATCAGCGGCGACCCGGAAAAAACAAACGTAACTCAACCGGTAAAAGTGGAAGAAAATGAATACACCGATAATGAAATTATAACGGCTGATAATAATGAATTCACACAAACGCAAGTGACAACCACTGAGGAAAACATGCAAACCAGAAGATCAAAACGACAGTTATACGGGAAAGATTTGAATGAAGATGACGATGTTTCAGAATGTCCCGATTGTATTTTGGGAAGTTCTGTGCTTGTTATGTGTGCTCGTCATCGAATGCTAAGTATAAGTGATAAACCGGTCCCGTCGAGAGCTCGAGCAACACTTCCGGCCACTTATTTGTCGATCAATAAAGTTGGAACGGATGATAATGGAGAACCAATTTACGGTGTTTTTGCTCGAAAGTTTATCCCGAAACGTACTCAATTTGGGCCTGTCGAGGGTGTGATAATAAAGGATCCAAATGTTGAAGTAAATTTCCATAATGATATACAACTGATGTTAGAAAGtgaaactggtgtgatgtataAAATTGATACTAGTAATGAaaATCTATCAAACTGGATGCGATTCGTTCGAAAAGCTGAATCATACAAACAGCAAAATTTAGTTCTAAATCAAATGGGACCATCTTTATATTACATAACAACTTGTAATATTTTTCCGAGGCAAGAACTCACGGTTGGATATAGTACCGTATACGCCCAGAAACGTGGTTTGGTGACATTACCACCGGAACCTAGTAAAGAATGGACATGTTTTGATTGCAATTTAAATTTCACGTCTTCCAAAGAGCTAGAAGATCACTTATGCATGCACGATTATGCACATCATATGTTTATCGACGAgaagaaagtgaaaaaatttaaacacaaaaaGAAACGGGCCGATTTGTCGCCGAAGAAGAGTTTGAGAGAAACCGTTTTCATTAAGAACGAGGATAATTCACAAAATTCGAAGGAGAATCATGTTGTTGTATCCTCCACCGAAAAGGACACTTTATCGGAAAAAGAAAATGAAGACAAaaattacATTTGCAAGGAGTGTAAGAAAACATTTGAACTTTCGATTTTGCTCGAAATCCATAGTTATTTTCATCAGTGCAATGGAGTTGATACAAATGTGACATCGTCTTCAGATGAGCAGTTTATTTGTCCGGAAtgtgatttaaattttacgtcacGTTATCAGTTAGCGGTACACGTTACTAATCAGCACCAGGTGGTTGTCAAAAATTCGGCGAAACCGAACAAGTGCACAATTTGTTACAAGTCATTCACTTCATTAGAACGGCTTCAGAAACACATGTTGGTTCACGGCTCTGATGACACAAAACCACTCCAATGCAACATTTGTTCTAAACGATTTTTAAGTAGTTCAGCATTAACTTGTCACCTGCGACGTCACAAAAATGACAAAATCACTTTTGAGTGTCCCATCTGTAAGAAAGTTTTCAGCCAGGTTTTAACTTACAAGGAACATGTGAAAACTCATAGTATTGACGGGATATACACTTGCCCACACTGTAAAAAGGAATTCAAAGAATACAGCGCAATCCGAAAACATATTCGAGCATTTCATTGTGACCGTAAACACATGTGTAACTATTGCGACAAAGTTGTCCCCACGTCTGACAAACTCAAAATGCATCTACTCAAACACTCGGACCATCGAGAATTTCTTTGCGCCACCTGTGGCAAACAATTCAAACGTAAAGATAAACTCAAAGAGCACACAAAACGGATGCACGACGATAAAGACAAACAAGATGACACCATCAGAACAGTCACCGACAATAAACAAGATGACACGCATGCGCACAATGGCAAAAAATTCATGCCAAAAGTTTCCCCCACCGACTATCACCGTTTCATCTATAAATGTCACACGTGTTTGGTTGGATTCAAACGTCGCGGCATGTTAGTCAATCATCTGGCCAAACGACACCCCGACATTCGACCCGATTCAGTGCCCGAACTAAATTTACCAATACTACGTACCACTCGCGACTACTACTGTCAATACTGTGAAAAAGTGTACAAGAGCAGTTCAAAACGCAAGGCGCATATCTTAAAAAATCATCCCGGTCTAGAATTGCCGCCGAATCGGACACGTGAAATGGCCGATATCACCGGAATGCTGAATCCAACGTTCACCCAAACGGTGGGCAGTGTTACGACCAATCCGCATAATTGTCAATGGTGTCATAAACAGTATGCGAGCAAAGCAAAATTGTTGCAACACCAGCGCAATAAACATCCGGAAATGATGGCCGAAGTGAAAAAGGAAGTTAAAACGGCAAATAAAAATGTGGCGGACTCGATGACGACGTCGGATAATGGACAAGATTTCGTTGAAGAGGAACATAAATTACCAGCAATGTTCAAAGATGAAAATAAAACACCACATCCTGATTCGAATCATAATTCGAAAGATGTCGCTTCGGAATATTTGAACACTGATGGATTTGATACGGACATTCTATTGACTAACAAAGACAATAATTCTAAAGTTGAATTTccacgtgaaattttgaacgaCAACGTAAATAATATCCCGGACGAATACCGCCTAACTCAAAACCACCCAAATTTCCCAATTGTTACCAACGAGCAAGACACGTCATCAATGCCGGTCGGCGATTCCGTACTACGCGCTCTACTAACATCAGCCGCGCCAACAGCACAGCGTGATTCGTGGCCCGAGAGTTCACCATTCGCATCGTACATTCCACCGCCACgttga
- Protein Sequence
- MESGSPGVDADSKPLMLPGDMWSSPEPTIRATNDQSQDAAHNPQLLFIAVEYVNDGNVNYNNLNTSSFAPAQEFSDLDEHLSPIDSSNITSTNQYSPNVYSINNNETNLANSPSSTYNDNSFVILSNNSEQIAQPPNGFSLSSVDGNLNIFRQVVTNRLCRQVDSVDSDLKEENEPVELLITDQDTGIAYSLSQENSLAEQQDINRILSNLDPTSGDVRLRLAEDRLLDSQSLVLDSNHLISLEDHVLMDNGTLVLKSDLPADLNGMVQHIDLNSLDPNMSTNITENYKNITDSYMEDDNVEDNNLSEIIISGDPEKTNVTQPVKVEENEYTDNEIITADNNEFTQTQVTTTEENMQTRRSKRQLYGKDLNEDDDVSECPDCILGSSVLVMCARHRMLSISDKPVPSRARATLPATYLSINKVGTDDNGEPIYGVFARKFIPKRTQFGPVEGVIIKDPNVEVNFHNDIQLMLESETGVMYKIDTSNENLSNWMRFVRKAESYKQQNLVLNQMGPSLYYITTCNIFPRQELTVGYSTVYAQKRGLVTLPPEPSKEWTCFDCNLNFTSSKELEDHLCMHDYAHHMFIDEKKVKKFKHKKKRADLSPKKSLRETVFIKNEDNSQNSKENHVVVSSTEKDTLSEKENEDKNYICKECKKTFELSILLEIHSYFHQCNGVDTNVTSSSDEQFICPECDLNFTSRYQLAVHVTNQHQVVVKNSAKPNKCTICYKSFTSLERLQKHMLVHGSDDTKPLQCNICSKRFLSSSALTCHLRRHKNDKITFECPICKKVFSQVLTYKEHVKTHSIDGIYTCPHCKKEFKEYSAIRKHIRAFHCDRKHMCNYCDKVVPTSDKLKMHLLKHSDHREFLCATCGKQFKRKDKLKEHTKRMHDDKDKQDDTIRTVTDNKQDDTHAHNGKKFMPKVSPTDYHRFIYKCHTCLVGFKRRGMLVNHLAKRHPDIRPDSVPELNLPILRTTRDYYCQYCEKVYKSSSKRKAHILKNHPGLELPPNRTREMADITGMLNPTFTQTVGSVTTNPHNCQWCHKQYASKAKLLQHQRNKHPEMMAEVKKEVKTANKNVADSMTTSDNGQDFVEEEHKLPAMFKDENKTPHPDSNHNSKDVASEYLNTDGFDTDILLTNKDNNSKVEFPREILNDNVNNIPDEYRLTQNHPNFPIVTNEQDTSSMPVGDSVLRALLTSAAPTAQRDSWPESSPFASYIPPPR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -