Bneb014254.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- zfy1
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000003.1:48160254-48161788[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00029 0.016 17.0 0.3 1 23 154 177 154 177 0.97 2 11 0.33 18 7.4 6.8 2 23 183 204 182 204 0.97 3 11 0.0008 0.044 15.6 1.0 1 23 209 231 209 231 0.95 4 11 0.00033 0.018 16.8 3.8 1 23 237 260 237 260 0.97 5 11 0.15 8.3 8.5 1.3 2 23 268 288 267 288 0.94 6 11 0.00017 0.0095 17.7 0.4 2 23 295 317 294 317 0.95 7 11 8.3e-05 0.0045 18.7 0.5 3 23 328 348 326 348 0.96 8 11 0.00017 0.009 17.8 1.4 1 23 354 377 354 377 0.96 9 11 0.00014 0.0076 18.0 3.5 1 23 383 405 383 405 0.97 10 11 1.3e-05 0.0007 21.3 1.2 1 23 411 434 411 434 0.95 11 11 2.5e-05 0.0013 20.4 1.4 1 23 440 462 440 462 0.98
Sequence Information
- Coding Sequence
- atgatTCAGGCATGTGCAGCTGTCAAGATTTCATTTAATGATGAATTGCCGAGCCACATTTGTCAAGACTGCGTAAATCGATTACAAGATTCGTTTGATTTCAAAGAACTTTGTGAAAGTTCTGATAGTAATTTAAGACAAATTATTAAGAAGCATAAAAGTAGTAATGAAGATGAAAATCCCATTCCTGATGACGTTTCGGTGAAAAGTGAAGCAGTTGATTCTGACGAGGCGGAAAGTAAGGAAGTAAAGTGCAAAGAAGAAGTGGACGACAATAATTCAAATGCTGGTAATGACAATGAAGAATCATCGTATCCAAAAACAGACGAAGATGACGAGTTTTTCAAAGATGAAGtaatcgattcaaattttgGTTCTGAAGTGAGTAAATCAAAATCAGTTAAAACTGATAgaagaaagaaaaattcaaatttaaaggTGAAAAGAAAGGAAAAACCGTACGCTTGTGAaaaatgtaatgaaaaatttataaaaacttggTCTCTTGCCGTACATATGAAACGTGTACATAAGTTCAAAGGTATAAAATGTGataaatgttcaaaaatttgtttccaCGAATTACACTTACGCGACCATCAAAAAATCCATTACGGCACAGAGTTTGTTTGTGACATTTGTCAAAAATACTTTATAAATCAAACAAAATTAGATCGGCATAAAAGTGCCCATGTGACCGAACGAACGTTCCACTGTTTTCAGTGTAACAAATCATTTAAAGACAAATGGGTCCTTCGTCAGCATGTCCGAAAAATACATTTACATACAGAGAAACGAGTATCGTGCGAAATTTGcggtaaaaaattattgtcgAAACATATAAAACGACATCAATTAATACACCAGAAACGTGAAACCATTCCATGCAGCCAATGCCCGAAACAATTCATTCACCCCAAATCGTTACAACTGCACATTGAACGGGAACACGAAAATATCGGTCGAAAATATAATCATCTGTGTAACGTTTGCGGCCGAAGTGTTGGTTCGCAAGCGGAACTGAAACGACACTTACTAACACACACTGGCGAAAAACCGTACGCATGCGATAAATGTGATAAAAAGTATCGCACCACGTACATGTTGAAGACGCATGTATCGCGGGCCCATTTAAATCAACGTAATCACATCTGTAGTCATTGTTCACGGGGATTTTTCGATCGAGTTCAACTAGAAAATCATATACGCACTCACACGGGCGAAAGACCATTCGCCTGTGTCACGTGCAACAAgagttataaaacaaaatcgATGCTACAATCACACATGTCAATAAACCACTTGAATAGACTGAACTATTcatgtaaaatttgtttaaaacgaTTTAACGATCGAAGAAGCTTGATCAATCATCTGAAAGTGCATACTGAACAAAAATCGTGTGGATTTGAGATTTTAGGAGtgtaa
- Protein Sequence
- MIQACAAVKISFNDELPSHICQDCVNRLQDSFDFKELCESSDSNLRQIIKKHKSSNEDENPIPDDVSVKSEAVDSDEAESKEVKCKEEVDDNNSNAGNDNEESSYPKTDEDDEFFKDEVIDSNFGSEVSKSKSVKTDRRKKNSNLKVKRKEKPYACEKCNEKFIKTWSLAVHMKRVHKFKGIKCDKCSKICFHELHLRDHQKIHYGTEFVCDICQKYFINQTKLDRHKSAHVTERTFHCFQCNKSFKDKWVLRQHVRKIHLHTEKRVSCEICGKKLLSKHIKRHQLIHQKRETIPCSQCPKQFIHPKSLQLHIEREHENIGRKYNHLCNVCGRSVGSQAELKRHLLTHTGEKPYACDKCDKKYRTTYMLKTHVSRAHLNQRNHICSHCSRGFFDRVQLENHIRTHTGERPFACVTCNKSYKTKSMLQSHMSINHLNRLNYSCKICLKRFNDRRSLINHLKVHTEQKSCGFEILGV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -