Basic Information

Insect: Brachynemurus nebulosus
Gene Symbol: -
Assembly: GCA_035578155.1
Location: JAPWDM010000005.1:52297256-52305373[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0027 0.15 14.0 0.3 1 23 261 284 261 284 0.95

2 11 0.0016 0.086 14.7 0.3 1 23 289 314 289 314 0.96

3 11 0.019 1 11.3 2.7 1 23 320 343 320 343 0.96

4 11 0.00022 0.012 17.4 0.9 1 23 348 370 348 370 0.98

5 11 8.2e-06 0.00044 21.9 2.7 1 23 374 396 374 396 0.99

6 11 0.0013 0.072 14.9 3.0 1 21 402 422 402 423 0.95

7 11 0.011 0.59 12.1 1.7 3 23 439 459 437 459 0.95

8 11 0.00016 0.0086 17.9 1.8 1 23 465 487 465 487 0.99

9 11 1.6e-05 0.00088 21.0 5.1 1 23 493 515 493 515 0.98

10 11 3.2e-06 0.00017 23.2 1.2 1 23 521 543 521 543 0.99

11 11 0.001 0.055 15.3 3.4 1 23 549 571 549 571 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0027	0.15	14.0	0.3	1	23	261	284	261	284	0.95
2	11	0.0016	0.086	14.7	0.3	1	23	289	314	289	314	0.96
3	11	0.019	1	11.3	2.7	1	23	320	343	320	343	0.96
4	11	0.00022	0.012	17.4	0.9	1	23	348	370	348	370	0.98
5	11	8.2e-06	0.00044	21.9	2.7	1	23	374	396	374	396	0.99
6	11	0.0013	0.072	14.9	3.0	1	21	402	422	402	423	0.95
7	11	0.011	0.59	12.1	1.7	3	23	439	459	437	459	0.95
8	11	0.00016	0.0086	17.9	1.8	1	23	465	487	465	487	0.99
9	11	1.6e-05	0.00088	21.0	5.1	1	23	493	515	493	515	0.98
10	11	3.2e-06	0.00017	23.2	1.2	1	23	521	543	521	543	0.99
11	11	0.001	0.055	15.3	3.4	1	23	549	571	549	571	0.98

Sequence Information

Coding Sequence: ATGTATTCAATTTATGATAAATATTCGGACGAATATAATGAACCTAATGAACCAATATGTGATATGATAATGTATTGTGCTACTGTAAAAatagGGAAAGGGGATGGATTACCAAATTTATTGTGTCAGATTTGTAAAGCTCGACTTAGAGCAGCTTATTTATTCAAACGAGACTGTGAAGAATCGGACAATATACTACACCAAATGCATCAAACTATACAAATTGATGGAATTAACTatAGAGTACTGACAACCGAAAAGGATGATTACAGTCAAATACATCAATTCGAAAACTCTAGTTCTCCTATGGTTGTATTACAAGTTATTCCTGAAACTGATATGTTTGATATTGATATTAAATCAGAGCCTTCAGACGATGATGAGAAAATGGATGTAACTGAAGATATTCAGCGATTAGAATCCGATACTGAAGAATTACAACCAGAGAAAAATCCTACGGAAGCAGATACATCACTTAATACTCGAACTGCTGAGCtagttaaacaaaaaattgaagaaattaCAAAAAGAATTCTTAAACGAATTCCTAAGAATATTAAATCAGAGCCTTCAGACGAAGATGAGAAAATGGATGTAACTGAAGATATTCAGCAATTAGAATCCGATACTGAAGAACTACAACCAGAGGAAAATCCTACGGAAGCGGATACATCAACTAATACTCCAACTGCTGAGCtggttaaacaaaaaattgaagaagTTACAAAAAGAATTCTTAAAAGAATTCCTAAGAAACTTCGTCGTCCGAGACCTAAAAAATTCTATTGTTACGGTTGCAGTTTAATGTTTACCACGAAGGGTGGACTTGACGTACATATGTCCGAAAATCATCCAGAGCAAAAATTTGTCTGCAATTTAGAAAACTGTAATAAGGAATTCACAAATTGGATAAAATACTCAGTACATTTAAAAGTTGATCATTCCGTAGAAAATTGTTTTACTTGTCGAAAATGTCAAACAAGTTATCAACAAAAAGCATATTTAGATAAACACATATTTAGTCAACACGGTGATCGCCCTTACGTATGTGAACATTGCTCAAAACGATTTCAAATAGCAAAAGCGTTAGAACGTCATCTGAATGTGCATACCGAAAAATACAAATGCAAGTTGTGCGATAAGtgtTTTCCATCAGAGTCCGTGTTACAGAACCACAGACGTATCCACAATACCGAGGATTCGTATGAGTGTTACGAATGTGAcgaaaaattttctacaaaattatttctgaaacgTCATATTTGTAAGAAAAATCGCAAAGccgaagaaaacaaaaaagtgagAAATCATCTGTGCCCGTATTGTGCGAAACGATTTTTTCTACCGCATCTTCTATCAAACCATATTCTTATTCACACCGGTGCCAAACCGTTCAAATGTGACTACTGTGAATATCGTTGTAGCACGAAAGAGGGACTTGCATCGCACGTTCGAATTCACACTGGTGAACGGCCGTACAAATGTAGTTATTGTGGCAAAGATTTTCGACAAAAGTCATGCTTAACGATTCACGAACGATTTCATTCCGGTCATAGACCGTACGTTTGTTCAACGTGCCAAAAAGGCTTCACAAATAGTAAAGATCTTAAGGTGCATGAACGAACTCACACGGgaatcaaattattttcatgTGATATTTGTGATAGCAGTTTCACCACAAAACATTATCTCGGTGTACATAAGAAAAAACATGAGAAATGA
Protein Sequence: MYSIYDKYSDEYNEPNEPICDMIMYCATVKIGKGDGLPNLLCQICKARLRAAYLFKRDCEESDNILHQMHQTIQIDGINYRVLTTEKDDYSQIHQFENSSSPMVVLQVIPETDMFDIDIKSEPSDDDEKMDVTEDIQRLESDTEELQPEKNPTEADTSLNTRTAELVKQKIEEITKRILKRIPKNIKSEPSDEDEKMDVTEDIQQLESDTEELQPEENPTEADTSTNTPTAELVKQKIEEVTKRILKRIPKKLRRPRPKKFYCYGCSLMFTTKGGLDVHMSENHPEQKFVCNLENCNKEFTNWIKYSVHLKVDHSVENCFTCRKCQTSYQQKAYLDKHIFSQHGDRPYVCEHCSKRFQIAKALERHLNVHTEKYKCKLCDKCFPSESVLQNHRRIHNTEDSYECYECDEKFSTKLFLKRHICKKNRKAEENKKVRNHLCPYCAKRFFLPHLLSNHILIHTGAKPFKCDYCEYRCSTKEGLASHVRIHTGERPYKCSYCGKDFRQKSCLTIHERFHSGHRPYVCSTCQKGFTNSKDLKVHERTHTGIKLFSCDICDSSFTTKHYLGVHKKKHEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -