Basic Information

Insect: Brachynemurus nebulosus
Gene Symbol: -
Assembly: GCA_035578155.1
Location: JAPWDM010000029.1:3605389-3616512[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.04 2.2 10.3 0.1 2 23 128 150 127 150 0.96

2 16 0.0062 0.34 12.8 0.2 2 23 154 176 153 176 0.94

3 16 0.054 3 9.9 2.4 3 23 320 341 320 341 0.95

4 16 0.056 3.1 9.8 0.6 1 23 565 588 565 588 0.95

5 16 0.00021 0.011 17.5 0.2 2 23 598 620 597 620 0.94

6 16 3.4 1.8e+02 4.2 0.9 9 23 635 649 633 654 0.82

7 16 0.036 2 10.4 6.4 1 23 702 725 702 725 0.92

8 16 0.029 1.6 10.8 0.3 2 23 806 828 805 828 0.96

9 16 0.0004 0.022 16.6 0.3 1 23 864 886 864 886 0.96

10 16 0.00014 0.0077 18.0 1.6 1 23 891 913 891 913 0.97

11 16 6.7e-07 3.7e-05 25.3 2.6 1 23 918 940 918 940 0.98

12 16 0.00016 0.0089 17.8 1.0 1 23 946 968 946 968 0.98

13 16 0.0013 0.07 15.0 5.8 2 23 975 996 974 996 0.96

14 16 2.6e-05 0.0014 20.3 0.5 1 23 1013 1036 1013 1036 0.97

15 16 2e-05 0.0011 20.7 2.4 1 23 1043 1065 1043 1065 0.98

16 16 1.2 65 5.7 0.0 2 23 1072 1094 1071 1094 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.04	2.2	10.3	0.1	2	23	128	150	127	150	0.96
2	16	0.0062	0.34	12.8	0.2	2	23	154	176	153	176	0.94
3	16	0.054	3	9.9	2.4	3	23	320	341	320	341	0.95
4	16	0.056	3.1	9.8	0.6	1	23	565	588	565	588	0.95
5	16	0.00021	0.011	17.5	0.2	2	23	598	620	597	620	0.94
6	16	3.4	1.8e+02	4.2	0.9	9	23	635	649	633	654	0.82
7	16	0.036	2	10.4	6.4	1	23	702	725	702	725	0.92
8	16	0.029	1.6	10.8	0.3	2	23	806	828	805	828	0.96
9	16	0.0004	0.022	16.6	0.3	1	23	864	886	864	886	0.96
10	16	0.00014	0.0077	18.0	1.6	1	23	891	913	891	913	0.97
11	16	6.7e-07	3.7e-05	25.3	2.6	1	23	918	940	918	940	0.98
12	16	0.00016	0.0089	17.8	1.0	1	23	946	968	946	968	0.98
13	16	0.0013	0.07	15.0	5.8	2	23	975	996	974	996	0.96
14	16	2.6e-05	0.0014	20.3	0.5	1	23	1013	1036	1013	1036	0.97
15	16	2e-05	0.0011	20.7	2.4	1	23	1043	1065	1043	1065	0.98
16	16	1.2	65	5.7	0.0	2	23	1072	1094	1071	1094	0.95

Sequence Information

Coding Sequence: ATGGATGAAAATAGTGGAAAAATTGTTGATAAGAACCGAAAACCGATCAAATTAACAATAAGAGTTGAGCAGAAAAAGTCGAAACGTAAAAAAAGTAATCCATCGCGAATTCCACAAATTGAAAATATGCCCGAagtcaaaaaattacttttgatCGAAAACAAAATTCTCAGCATTTCCGATGAATCGGGCGATGGTACTGCCAAAGAAACGCTAATTGAATGCCGTAACGCAGAACGCGCTCCGGATCGCGAAGCTTTGAacaataatttgaataaatgcGCACTGTATGGCCCCCCATTTGTTTGCAACATGTGCAAACAGTGGTTTCTTTCGAAGGAGAAACTTCTGATGCATTTTATTGTGAATCATCAGAAGGTTCCGTGTCAGATGTGCTTGCtggtttttgaaaatgttaGCGCCCTTTCACGACACGAGCGTAAAGCGCATCTTCCACTCGTCTGTGAACTTTGTAAGCAAGAGTTTGAAAGTAATACGGACTTGAACGCACATTATGAATCTAGTCATAGGACAATTTCATGTCGATTTTGTGGTTTGCTCATTCAACCGGTCTCATACTACCCGCTACATATCAATCGTAAACATAACGTCCACGAAAACTATTGTCGCGACGAAAATCTACAAATTGTTGACGATTGGCATCAACGGTGGAATTTCCGGTGTCGCATGTGCAACAAGAATCGACCGAAGAAGGATTTGTACGGACATTTTCGTATGTATCACAAGGTGACGGCGATTTCGATGGTCAGTTTAGTCACGCTCGAGAAATTCGAGTTTCAAATGAACGGGAGTATCGATGAGGTGGTACCAATGAAGAAACCGACCGTACAAATTTCGTTGAAATCGGATCCGGATGTGGTTTGTGCGGTGTGCAACGGGACGTCGCCTAAGGTTCCAATAATATTTCATCAGATTTTTTGTTTGAAGAAGCAAGGATGTAAATATTGTTTCGAAACTTTCGACGATCAGTATCAGTTGCACTATCACAAAGAGATCACGCACAAATTGTTCCAGTGCGGTCTTGGGTGCTCGAATATCGCCAGTCCGAACGAGCGTGAATTACTGATCCATTACAAAAAGTTCCACGACATCGTGGCGTGTAAATTTTGTGACGTGTTCGTGAGCTCCGAGCGACAGAAGTACGATATGCACTTGATTAACGAGCACGCCATCAAAGATTTCGTCGTTGAAGAAGTTCTAAATCTGGATTTATTCGAGGTGAAGACGATTAAGAGCAAGAAGACGGTTACATGTTGTCTGTGTGAACGAGACCTCACGGAGATGATGTCATGCGTGGAAACGGTCTATGGACACTACGTCGACAAACATTCCATTATTTTGAAAGCGATTGTCGGCTTCAATCAGTCGAATCCATTTTCGCCGGTGAAGACGCCCGAGCTACCGACGCCACTTGGGAAATTTGATTTTGGCGATTTGATGGAAAGCGGTGATGCACATTCAGAGGGTGAGGATGAGGATGAAAAAGATGTCGAGGAGTATGCAGAAATTGTTCAGGATGTTAATCCGGAGTATATGGAATGTATTACGAATGAGGGTTCGAGCGATGAAGATGATTCTGTTGATCCGTCACTTCTTGAGGTCAGAATCAAAGAAGAACCACTAGACGAGGACGAAGAAACTGAAATTTTCAACAgtatcgatttaaatcgattcaCCTGCGATCTGTGTGATCtaaaatttctaacaaaaagTGAACTCTTGGAACATTCACAAATATTCCACGGTTTCAATGCCAAATTACCCCTGCTCACTTGTGATGACTGTTTTGAAACATTTACCAACGAAAGTAATTTAGAACTACATTTAATAAATGTCCACGGTAAAAGTATGGAAAAAGGATCCAGAGTCAATATCAAATGTCCATTTTGTAATTTGGTTAGTTTTAAGAAACATATCAGATATCATGTACAGAAAGAACATGCGGAAGAACTCGTGGATGTCGCTTGTAAGGATTCTGTTGTTggatataaatgtaatttttgtaatagttTATTTTGGAAACATCAGGAACGTAATGATCATGAAATTAAGGAACATTATAAGGAAGTgtcgcaaaatatttttaaatgttatgttTGCTTTAAGGAGTTTAGTAGAAAGTTCTGTTTAAGGAAACATGTGGAATTCACGCATACGCTAGaacaaaaatttctaatttcaaaaatgtccTACAAATGTTTACAATGTTGCGTTCTGCTGCCACGTTTGGACGAGGCTCGCGAACATTTCCACACTCAACATCCAGATCAAATTATACATCGATGTTCCTTCGTCGGCTGTAATGTTAGGAATGCATCCAAAGAAGTTTTGGAGGTACACGTTAAGACTAGtcatttaaaaccaaaaatggAGTACGTTTTATTTAAACCAAAGCCATGTGAAATATGTGGGAAATATTTAGCCAGCCAAAAATCCGCCAAAATTCACTATCGAATGAAGCACACGGGCGAACGTATAGGTTATGGTTGCCGTCTATGCGCCGAGAGATTTGACACCACTGAAAAAAGGAAATTACATTACGCCATCGTCCATACTGGACTCCGCGCCTACATCTGTTCCGTGTGTGGAAAAGGCTTCAACAGTAAATCGGGACTCTATGGACACAAACAATTACACAACAATTTCAGTTTTGAGTGCGAATATTGccataaaattttcattCGAAAGGATACCTATAACGAACATGTCCTGATCCATTCTGGTCCGCGACATCAGTGTCAGTACTGTCCAAGGGCGTTCACACAGCGCTCAAATTTGATCCGACACACAAGGATTCATACTGGCGAAAAACCGTATCAGTGTCCAATGTGTCCAAAACGATTTAGTGATAAGGGGGCGTGTAATTCCCACGTTCGAGTGCACACGCGCGAAGAGGAGTGTTCTTGTCCATTTTGCGGGAAGACGTACAGTAAAAAACAGAAGCTGAAGTATCACCTGAAGAAACATACTGGAGAAGAACAAGTTTCTGGCAAGGACGCTGGTGGGGATAAGACGTTTAGTTGTAGTGAGTGTAAACAGGTCTTTACCGATGCAATTTATTTAAGACGCCATATCATCACAACGCACTTTAAAGCGGCCTGCAACTACAAATGTCAATTGTGtggtcaaaaatttattacacagAATCATCTGAATTCGCATATTTTATCACACTCGGGGGTCAAACATTCTCAAtgtctACTCTGCGAAGCCGCTTACGCCTCCGAGGAGAACATCATTCAACACCTGCGTGAAGTTCACAAAATAATCGATGAAAAAGAAATTGACAACTATTtcaaacaaaattcatttgaacaAGTTACCGAAAATTCCGAAGAAGGTACCAAAGATACAAGACAAATTGATGAAGAACGCGACACATCGTCCCCGAAAAAGTCAAAATCGCCGAGCAGTAGTAATAAACGGCGTAAAAGTAAACAGTTCTCTGATGATGAGGATTTGTATGGGGAGTTTGCGCAACAAACGTTTGTGTCGACGAAGAGTCGACAGGTGAAGAAACCAAAGAGATATATTGAAGAGAGTGATATCGTGTTTATGAAAGCTGAAACGGAGAATGTAGATGCTCAGAAGTTTTTGGAAGTACAAATTAAAGAGGAACCAGGTGTTTAG
Protein Sequence: MDENSGKIVDKNRKPIKLTIRVEQKKSKRKKSNPSRIPQIENMPEVKKLLLIENKILSISDESGDGTAKETLIECRNAERAPDREALNNNLNKCALYGPPFVCNMCKQWFLSKEKLLMHFIVNHQKVPCQMCLLVFENVSALSRHERKAHLPLVCELCKQEFESNTDLNAHYESSHRTISCRFCGLLIQPVSYYPLHINRKHNVHENYCRDENLQIVDDWHQRWNFRCRMCNKNRPKKDLYGHFRMYHKVTAISMVSLVTLEKFEFQMNGSIDEVVPMKKPTVQISLKSDPDVVCAVCNGTSPKVPIIFHQIFCLKKQGCKYCFETFDDQYQLHYHKEITHKLFQCGLGCSNIASPNERELLIHYKKFHDIVACKFCDVFVSSERQKYDMHLINEHAIKDFVVEEVLNLDLFEVKTIKSKKTVTCCLCERDLTEMMSCVETVYGHYVDKHSIILKAIVGFNQSNPFSPVKTPELPTPLGKFDFGDLMESGDAHSEGEDEDEKDVEEYAEIVQDVNPEYMECITNEGSSDEDDSVDPSLLEVRIKEEPLDEDEETEIFNSIDLNRFTCDLCDLKFLTKSELLEHSQIFHGFNAKLPLLTCDDCFETFTNESNLELHLINVHGKSMEKGSRVNIKCPFCNLVSFKKHIRYHVQKEHAEELVDVACKDSVVGYKCNFCNSLFWKHQERNDHEIKEHYKEVSQNIFKCYVCFKEFSRKFCLRKHVEFTHTLEQKFLISKMSYKCLQCCVLLPRLDEAREHFHTQHPDQIIHRCSFVGCNVRNASKEVLEVHVKTSHLKPKMEYVLFKPKPCEICGKYLASQKSAKIHYRMKHTGERIGYGCRLCAERFDTTEKRKLHYAIVHTGLRAYICSVCGKGFNSKSGLYGHKQLHNNFSFECEYCHKIFIRKDTYNEHVLIHSGPRHQCQYCPRAFTQRSNLIRHTRIHTGEKPYQCPMCPKRFSDKGACNSHVRVHTREEECSCPFCGKTYSKKQKLKYHLKKHTGEEQVSGKDAGGDKTFSCSECKQVFTDAIYLRRHIITTHFKAACNYKCQLCGQKFITQNHLNSHILSHSGVKHSQCLLCEAAYASEENIIQHLREVHKIIDEKEIDNYFKQNSFEQVTENSEEGTKDTRQIDEERDTSSPKKSKSPSSSNKRRKSKQFSDDEDLYGEFAQQTFVSTKSRQVKKPKRYIEESDIVFMKAETENVDAQKFLEVQIKEEPGV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -