Bneb008853.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000001.1:184882218-184884874[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.028 1.5 10.8 4.0 1 23 145 167 145 167 0.97 2 10 3.5e-06 0.00019 23.1 0.4 1 23 173 195 173 195 0.96 3 10 0.00015 0.0079 18.0 2.2 1 23 201 225 201 225 0.95 4 10 2.9e-06 0.00016 23.3 2.1 1 21 231 251 231 255 0.92 5 10 0.00022 0.012 17.4 1.7 1 23 273 295 273 295 0.96 6 10 0.012 0.67 11.9 1.0 2 23 301 323 300 323 0.90 7 10 1.8e-05 0.00096 20.8 1.2 1 23 329 351 329 351 0.98 8 10 0.00015 0.0079 18.0 3.9 1 23 357 379 357 379 0.98 9 10 7e-05 0.0038 19.0 6.2 1 23 385 407 385 407 0.99 10 10 6.7e-06 0.00036 22.2 2.0 1 23 413 435 413 435 0.98
Sequence Information
- Coding Sequence
- ATGGAAGTTGCTCCGGTCAAAATCACGGAAGACGATGTTTTTCCTTTGAAAATATGTAATCCATGTATGTTAAAAGTCCAACAAGCTTAtgaatttcaacaaaaatgtatCGAAGTCCAGGAATTTCTTTCGTCTCAATTCTGTATCATAGAAGATAAAATAGAATTGGGCCCAAATAAAATTGAACCTGATTTACAGAATAGTGaaagtggaaataaatttatagcagatgataaagaTGACGTCTTAAAAGAGATAAACGATGAAATCGAAGACACTGTCCTGGATAATGTTGACGAATATTTATACGAAGTTGACGATCAAGAGAATGAAAGTGGTGATCCAAATGACGACGATTATTCCGACGAGAAAGAGACAAAATCGAAGAAacgaacaaaattaaaaagggGAAAACGACAATTAGAGAAAAAACATCAATGCTCTCTCTGTCCAATGAACTTCATCTCCAAATATAAACTTACATGTCACATGTTGGTTCACACAAAAGAAAAACCCTTCATCTGTGACATTTGCGGCAACAAATTCACCTCAAATGGCAACCTGAAACGGCACGTGAAAGCCCACCGTGGAGAACGTGATTTCGCCTGCGATTTCCAAAATTGCGGTAAACGATTCTGTCAAAAAGTCACGCTGATCGAACATCGACGAATACACACGGGAGAAAAGCCATTTAAATGTCCACTCTGTGACAAATCGTTTAAAACCAGCAGCTGCCTGCGTCAACATCGTCTCGGCGCCGTACACGGAAACGTCCGACCACCAACGACCACCGCCGAGAAAAAACCCGAAGAACGACACGAATGCACCGAATGTGGTAAGACGTACGCGACCAAAAACGGACTATATCAACATTCGTTACGTCAcagcaataaaaaattgatttgttcgTTTTGTAATAAGGAATTTGTCTCGTATGCCGGACTACAGCAGCATAAGCATGCGCAACACACCGAGGATCACAAGTTTCAGTGTAATCAGTgcgggaaaatttttaaatatcaagtGGTATTTAAAACGCACATGTTAATTCATAGTGGCATTAAACCGTACAAATGCCAATACTGTTCGAAACGATTTACACAGAAAGGGCATGTCGTGTCACACGAACGATTACATACCGGTATTAAACCGTATCAGTGTGAATTCTGCCATAAAGTGTTCAGACATTTAACCACGCTACGAGATCATAGACGTATTCATACCGGTGAGGTGCCATACAAGTGTACAATATGTAATCGGGGTTTTTACAATTCGACAACgttaaaaaaacatttgattagtcataaataa
- Protein Sequence
- MEVAPVKITEDDVFPLKICNPCMLKVQQAYEFQQKCIEVQEFLSSQFCIIEDKIELGPNKIEPDLQNSESGNKFIADDKDDVLKEINDEIEDTVLDNVDEYLYEVDDQENESGDPNDDDYSDEKETKSKKRTKLKRGKRQLEKKHQCSLCPMNFISKYKLTCHMLVHTKEKPFICDICGNKFTSNGNLKRHVKAHRGERDFACDFQNCGKRFCQKVTLIEHRRIHTGEKPFKCPLCDKSFKTSSCLRQHRLGAVHGNVRPPTTTAEKKPEERHECTECGKTYATKNGLYQHSLRHSNKKLICSFCNKEFVSYAGLQQHKHAQHTEDHKFQCNQCGKIFKYQVVFKTHMLIHSGIKPYKCQYCSKRFTQKGHVVSHERLHTGIKPYQCEFCHKVFRHLTTLRDHRRIHTGEVPYKCTICNRGFYNSTTLKKHLISHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -