Bneb042282.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Brachynemurus nebulosus
Gene Symbol
dib
Assembly
GCA_035578155.1
Location
JAPWDM010000050.1:985680-993282[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.006 0.33 12.9 6.4 3 23 455 475 454 475 0.97
2 11 5.8e-05 0.0032 19.2 0.6 1 23 481 503 481 503 0.97
3 11 3e-06 0.00016 23.3 1.1 1 23 509 531 509 531 0.99
4 11 0.0003 0.016 17.0 0.2 1 23 537 559 537 559 0.97
5 11 0.006 0.32 12.9 0.8 1 23 564 586 564 586 0.96
6 11 0.00061 0.033 16.0 1.6 1 23 667 689 667 689 0.97
7 11 0.0005 0.027 16.3 1.3 1 23 695 717 695 717 0.97
8 11 0.00025 0.013 17.2 0.1 3 23 725 745 723 745 0.97
9 11 0.0015 0.079 14.8 1.3 1 23 751 773 751 773 0.97
10 11 0.00058 0.032 16.1 0.5 1 23 777 801 777 801 0.98
11 11 0.0016 0.086 14.7 0.2 1 23 808 831 808 831 0.98

Sequence Information

Coding Sequence
ATGTTTCAAGCTGAGGGCAGATATCCAAAACGGCGTAGTCATTTAGCATTAGAAAAGTTTCGACTGGATCGCCCGCATATTTACAATTCAGCCGGCTTACTGCCAacgAATGGCCCAGAATGGTACCGTCTCCGTACCGCCGTACAGAAGAAAATAAATCATCCAGAAAATATCAAACAGTATATAGAACCAACAAATGAAGTAGCCGACGAATTCTGCGATTATATAAAGTATTTcatagCCATGaaattcatttcaaaaaaattaagcgAAATAAATGAAGGTAAACTGAAAGAAAAATCAAGTCAATCTGTATTGGAGCAGTTAATCAATTCGCCCGAATTAAACCCGAAAGATATTATTGGAATTGCATGCGATTTACTCTTAGCTGGTATCGACAcgACATCTTATACGATGAGTTTTATACTTTATCACGTGTCGCGAAATCGTTCAGTACAGAATCGTTTATATGAAGAAATCTGTACGTTACTTCCCGAAGAAAAATCGCATATAACATCCGATATCTTGCAGAAAGCAATCTATTCGCGTTGCGTAATCAAAGAAACGTTACGCATGAACCCCGTCTCAGTTGGAGTAGGACGAATTTTAGAAAAGGATACCGTATTCTCGAATTATGAAATTCCAGCCGGAacaGTTTGTGTAACGCAAAATCAAGTATCTTGTCGACTGAATAAATACTTTGAAGAACCCAACAAATTTATGCCAGAGAGATGGCTACGGGGTTCCGCCCAATACAAACCGTGTCACCCATATTTGGTTTTGCCTTTTGGACACGGTCCTAGAAGTTGTGTAGCACGTCGTTTGGCTGAACAAAATATGATGATAATGTTAATGAAACTTTCGCCTGATGACAATTTACCAAAATCAATTTGTAGTCAGTGTATTCCAAAATTAGTAAATGCTTATTATTTCCGATTACTCTGCATTAATTCCGATACAGTATTAAGGCAGTATAgaaatacattaaatttaaaactagaGCAAGAAAAATCGTCAACAgacaatattattttgaataatttaaaactagAGGGCGGCAGTAAAAATGAAGAGATTTACGACGTTGAACTGCTAATGAAGGAAGatagttcagaaaattattacataacCGTTGAATGTGACGAAACTGAGCATCAGTTATTAGATTTAGAAACTTTAGAGAAGTCAGAAGATGCCAGtattaaaagtgaaaataatCAACCCAACGAAATCGAAACGAATTCTGAAGTTGATTGCCAAAAAGTCATCCAAAAATCACGTAAACGGCGATTAGTTCGTCGCAATCGACAAAAACGAAAACAACTTTGCCGTCCTGACACTGACCAAACATCACCTCCGTGTTGCAAACAATGTAAAATGACTTTCGTCAGTCATACCAACCTAATTCGTCATTTAAGTACACATAATGGTGAAAAAAAATACAGCTGTACAGAGTGTAACAAAAAATTCGCAACATCCGCCTACGTAAAATCACATATGGTCGTCCATTCAAAAGAACGAAAATACTCGTGTGAACTTTGCGGCAAAACGTTTATGTTTAGCAACGATTTAACTGTTCACATGCGCAAACATACCGGGGAACGACCGTACGTTTGCGAAACGTGTGCCAAAGGTTTCGTATCATCGAGTGCATTGAATGCACATCGATTTAAACACGGACCAAAACGGTTTTTTTGTTGCGTTTGTAATAAAGGGTTCATTTATAAATTAGAATTGGCCTCGCACATCATAGTTCATAAAAAAGATAAGTTTATTGTGTATGAAGATGACGGTAAAATTACTGAACAAATGCCATCTATTGCAGATGGTTCACAATTGAACGATAAtgtgaaaaatataaatgatgAACATATAACAGGCGTAttaccgttaaaaaataaaaaaatggagCGGAGCCCTATCGGAATTACGCGTAAAaattatgaacagtttttgtcggaaatagataaattgaaaaaaacggCCAAAAATCAACAATATATTTGTGACGTTTGCAGTAAAGTGTTGTCTTCTTGTAGTAATCTATATAGACATAAATTAATTCACACCGGTGTAAAACCGCATGTGTGCGAAATTTGCAATAAAGGATTCAAACTAAAAGTGGATTTAGTCAACCACAAAAATCGCCATCTAGGTATTCGCACGATCGCATGCGAATACTGTCCAAAAATGTTTGCCTCACGAAGTGATTATGGTAAACATGTCTCCACTCATATGAGTCATAAGCCTTACGCATGCGATATCTGCAACAAATCCTATTATAATATCTATGCCCTTAAATACCATAAAAAGCAACATATGCACCCGTTCAAATGTACGCAAGACGGATGCTCAAAATCGTATATATCCGAGGACAAATTGgccaaacatttaaaaattcacGATGAGTCGAAACGTAAATTTCGTTGTGCACTGTGCGAGAAAATACTGAGCAATATGAATTCGTTGGCGCGACATATACGTAAGGTACATAATCGGGATGAGGAAATTCAACAGGATCACAGTCTTGATAATATTACAATAGTGCAGACCGTGCAAACTGTACAAACCACATAG
Protein Sequence
MFQAEGRYPKRRSHLALEKFRLDRPHIYNSAGLLPTNGPEWYRLRTAVQKKINHPENIKQYIEPTNEVADEFCDYIKYFIAMKFISKKLSEINEGKLKEKSSQSVLEQLINSPELNPKDIIGIACDLLLAGIDTTSYTMSFILYHVSRNRSVQNRLYEEICTLLPEEKSHITSDILQKAIYSRCVIKETLRMNPVSVGVGRILEKDTVFSNYEIPAGTVCVTQNQVSCRLNKYFEEPNKFMPERWLRGSAQYKPCHPYLVLPFGHGPRSCVARRLAEQNMMIMLMKLSPDDNLPKSICSQCIPKLVNAYYFRLLCINSDTVLRQYRNTLNLKLEQEKSSTDNIILNNLKLEGGSKNEEIYDVELLMKEDSSENYYITVECDETEHQLLDLETLEKSEDASIKSENNQPNEIETNSEVDCQKVIQKSRKRRLVRRNRQKRKQLCRPDTDQTSPPCCKQCKMTFVSHTNLIRHLSTHNGEKKYSCTECNKKFATSAYVKSHMVVHSKERKYSCELCGKTFMFSNDLTVHMRKHTGERPYVCETCAKGFVSSSALNAHRFKHGPKRFFCCVCNKGFIYKLELASHIIVHKKDKFIVYEDDGKITEQMPSIADGSQLNDNVKNINDEHITGVLPLKNKKMERSPIGITRKNYEQFLSEIDKLKKTAKNQQYICDVCSKVLSSCSNLYRHKLIHTGVKPHVCEICNKGFKLKVDLVNHKNRHLGIRTIACEYCPKMFASRSDYGKHVSTHMSHKPYACDICNKSYYNIYALKYHKKQHMHPFKCTQDGCSKSYISEDKLAKHLKIHDESKRKFRCALCEKILSNMNSLARHIRKVHNRDEEIQQDHSLDNITIVQTVQTVQTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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