Bneb008861.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- znf711
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000001.1:184947033-184949156[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00014 0.0075 18.0 2.7 1 23 171 193 171 193 0.99 2 17 0.022 1.2 11.1 1.6 1 20 198 217 198 219 0.95 3 17 0.095 5.1 9.1 6.6 1 23 222 244 222 244 0.96 4 17 0.016 0.85 11.6 0.8 1 23 251 274 251 274 0.97 5 17 3.5 1.9e+02 4.2 1.3 2 23 323 345 322 345 0.91 6 17 0.0011 0.057 15.3 1.8 1 23 350 372 350 372 0.97 7 17 4.1 2.3e+02 3.9 1.8 1 23 378 400 378 400 0.93 8 17 0.011 0.57 12.1 0.7 1 23 405 427 405 427 0.98 9 17 0.0061 0.33 12.9 0.3 3 23 434 453 433 453 0.97 10 17 0.0096 0.52 12.2 2.1 1 20 459 478 459 480 0.93 11 17 0.0014 0.074 14.9 0.7 1 23 494 517 494 517 0.96 12 17 0.00011 0.006 18.4 2.4 1 23 543 565 543 565 0.98 13 17 0.057 3.1 9.8 0.4 2 23 572 594 571 594 0.93 14 17 0.012 0.66 11.9 0.9 1 23 600 622 600 622 0.97 15 17 5.9e-05 0.0032 19.2 3.9 1 23 628 650 628 650 0.98 16 17 8.7e-05 0.0047 18.7 1.6 1 23 656 678 656 678 0.98 17 17 4.5e-05 0.0024 19.6 6.3 1 23 684 706 684 706 0.99
Sequence Information
- Coding Sequence
- aTGGAAACTGATGAAATATCATTGAAAATCTGTCCCGCGTGCGTAAATCAAATTGatcaatattacaattttttacaaaaatgtcgCGATGTCAATTTAATATTACAGCTTagtcaaaaattaatatcacaaaataaattaaaaactcaCACAGATGATACCAAAGAATTAGTGGTAGTAGCAGCAATGTCTGATGACAAAAACAATGAATCAGACAATCTACCTTCACAAATTGTAGAACACGAACAAAATTcaactgataaaattcaattggAAAATATGAATGAAAATTATGATGATTACATTACAGATAATATTATGGACGATTGGGATGAAATTGATACTGAAATTCCGGAACAAAAAACGGAATCCACAAATATAAAAGATGAGACAAACGATTTGGAGGATTATCATGGCCCACTGTCGCCAGACGTTTATATTCCAGTCGAAACGGACGATTTTGAAAATGACAttccaattaattttattaaaccggacgaaaatagtatttttcaaTGTTCGATTTGTCTGATATGTTTTATTTCACAATCATATTTggataaacatttaaaaacgcATCCGGaacaaatttataaatgtaCCACATGCGAATTGACATGTAGTCAATTGGCCGCATACAAAAAACATcaggaaaacaaaaaatactgttGCGATATTTGTAATAGAACATTTTGTATAGCTCCACATTTATATCGTCATAAATTTATTCATCAATTGAATCAACGTTACTTCAGTTGTGACGAATGCGGCTTAATCGTACTCGATAAATGTCAATTGACGCGACATCTACGAGTAACACATGGTATTAATACACACAGTGACGTTAACGAAAAAACTATAAAGGAAGAAGATATAGAAATTGGCTCAACTCAGTTTATTCCGCAAATTGATATACCCgaaataaaaactgaaaatggACGATTAATAGATGATGCAAAAGTTGTCCAGTGTCATATATGTATGCGATCGTGGATATCAGAAAAGCACTTAGAAAAACATGTTGAAGAAACGCATGCGCAACATCCATTCAAATGTGACATATGCGGTCTAACATTTAGCGTAATTGAATACTTCAGAACGCATCAGGAACATCATAACGAAGACAACGAGTTCTTATGTCACACGTGTGACCTAATTCTACTCACAAAATCACAATTTATCCATCACGCAATCGTTCACAGCAAGAGACGATACGCGTGCCATCTATGCGGTTTGGTTATGTCGAAAAGTTCAGCGTTAGACAAGCATAAACTAACGCACGACAACGAGAAGCGCATATGCGAAATTTGCGGTGCGACAATTTCGCCGCATAATCTAAGCAGACATATGAAAATTCACGATACCACGAAACCGCATCACTGTGAAAAATGTGGCCGCGGTTTTATACAGCGGCCGGCATTAATTAAACATAAATGTGATGCACCGTTGAAAAAACCACGCGAACCACAACCAAAACCACACATATGTCCTTATTGTCCAAAAGCAACCATTACCGACCACgcccttaaattacatattaagtCAGTGCACAACATAGAACCATCAActaaaaaagtatataaatatcCGAAAAAACCATCAATCACGCAACTCGAAAAGGGGAAATACCCGTGTCTAAACTGTGACCGTGTATTTgacagtaaaaaatatttacatcgACACGCGCGCTCTCACGCGTCAACACTCGACACCGAGTGTAAACCGTGCAAAATCACATTTGCCACGTACATGCTGTTGCAGGCGCATCGTCGCGAGCAACATATGAAACTTAAATCGCACAAGTGTCAACAGTGCGGTAAGTTGTTATCGTCCGCGCTCAGTTTACAGATACATGAGCGACTGCACACGGGCATTAAACCGTACCAGTGTTCGTATTGTGATAAATCGTTCCGACAACCAGCGCATAAATATAGACACGAGCGATTACACACCGGCGAGAAACCGTACGTTTGTGTACAGTGTAATAAACGATTTCGACATCAGACAACACTGATCGATCATGTAATGATACATAACAATGAATTGCCGTATCGATGTCATGTCtgtaataaaagtttttgtcGCGAGATACGGTTAGAGAAACATCTTAgaacacataaataa
- Protein Sequence
- METDEISLKICPACVNQIDQYYNFLQKCRDVNLILQLSQKLISQNKLKTHTDDTKELVVVAAMSDDKNNESDNLPSQIVEHEQNSTDKIQLENMNENYDDYITDNIMDDWDEIDTEIPEQKTESTNIKDETNDLEDYHGPLSPDVYIPVETDDFENDIPINFIKPDENSIFQCSICLICFISQSYLDKHLKTHPEQIYKCTTCELTCSQLAAYKKHQENKKYCCDICNRTFCIAPHLYRHKFIHQLNQRYFSCDECGLIVLDKCQLTRHLRVTHGINTHSDVNEKTIKEEDIEIGSTQFIPQIDIPEIKTENGRLIDDAKVVQCHICMRSWISEKHLEKHVEETHAQHPFKCDICGLTFSVIEYFRTHQEHHNEDNEFLCHTCDLILLTKSQFIHHAIVHSKRRYACHLCGLVMSKSSALDKHKLTHDNEKRICEICGATISPHNLSRHMKIHDTTKPHHCEKCGRGFIQRPALIKHKCDAPLKKPREPQPKPHICPYCPKATITDHALKLHIKSVHNIEPSTKKVYKYPKKPSITQLEKGKYPCLNCDRVFDSKKYLHRHARSHASTLDTECKPCKITFATYMLLQAHRREQHMKLKSHKCQQCGKLLSSALSLQIHERLHTGIKPYQCSYCDKSFRQPAHKYRHERLHTGEKPYVCVQCNKRFRHQTTLIDHVMIHNNELPYRCHVCNKSFCREIRLEKHLRTHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -