Bneb019359.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000005.1:52324108-52328195[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00038 0.021 16.7 0.6 1 23 146 169 146 169 0.95 2 11 0.016 0.87 11.5 0.3 1 23 174 199 174 199 0.95 3 11 0.02 1.1 11.2 2.8 1 23 205 228 205 228 0.97 4 11 2.2e-05 0.0012 20.5 0.5 1 23 233 255 233 255 0.99 5 11 3.7e-05 0.002 19.9 3.0 1 23 259 281 259 281 0.99 6 11 0.0066 0.36 12.7 2.4 3 21 289 307 287 308 0.93 7 11 2.7e-05 0.0015 20.3 0.9 3 23 324 344 322 344 0.95 8 11 7.8e-05 0.0042 18.8 2.5 1 23 350 372 350 372 0.99 9 11 3.4e-06 0.00019 23.1 3.0 1 23 378 400 378 400 0.97 10 11 7.4e-06 0.0004 22.0 0.9 1 23 406 428 406 428 0.98 11 11 2.4e-05 0.0013 20.4 4.2 1 23 434 456 434 456 0.98
Sequence Information
- Coding Sequence
- ATGTCAGAAATCTGtcgaatttgtttaaaaaaacgaaatactATGTATTCAATCTATGATAAATATTCGGACGAATATAATGAACCTATATGTGACATGATAATGTACTGCGCTTCTGTAATAATCGAGAAAGAGGATGGATTACCAAATTTATTGTGTCATACTTGTAAAGCTCGACTTGGAACAGCTTATTTATTTAAACGAGACTGTGAAGAGTCCGAAAATAAATTATGCCAAAAGCGTCAAACTGTACAAATTAACGGAACTAACTATGTaagaaaaaacattaatttcaaaaatgACGAAAAGCCAACGGAAGCGGATACATCACTTAATACACCATACGCTGAGTTGATTAAACAAGAACTTGAAGAATCTGAAAAAATAATTCCCAAAAATATTCCTAAGAAACCTCGCCGTCCGAGGCCTAAAAACTACTACTGTTACGGATGTAGTATAATGTTTTCCACAAAGAGCggacttgatacacatatgtCTGAAAATCACCCAGATCAGAAATTTGTTTGCAAtttagaaaattgtaataaGCAATTCATAGATTGGATAAAATATTCAGAACATTTAAAACTCGATCATTCGGTAGAAAATTGTTTTACTTGTCGAAAATGTCAAACAAATTATCAACAAAAAGCATATTTAGATAGACACATATTTACTCAACACGGTGATCGTCCTTACGTGTGCGAACATTGTCCAGAACGATTTCAAATGGCAAAAGCGTTAGAACGACATATGAATATGCATACCGAAAAATACAAGTGCAAGTATTGCGATAAGtgtTTTCCATCAGAGTCCATCTTGGAAACCCACAGACGTATTCACAACACTGAAGATTCATACGGTTGTGATGATTGtgatgaaaaattttctacaaaattatttttgaaacgtCATACCTGTAAGAAAATTCGCAAAGccgaagaaaacaaaaaagtgaaaagaCATTTGTGTCCCTATTGCGCGAAACGATTTTCTCGACCATTTCTTTTAACAAACCATATTCTTATTCACACCGGTGTGAAGTCGTTCAAATGTGACTACTGTGAATATCGTTGTAGCACGAAAGAATCACTTGCATCGCATGTTCGAATTCACACCGGTGAACGGCCATTCAAATGTAGTTATTGTGAGAAAGATTTTCGACAAAAGTCGAATTTGACGATTCACGAACGATTTCACACCGGTCATAGACCGTACATTTGTTCAACTTGCCAAAAGGGCTTCACAAGTAGCAATGATCTTAAGGTTCACGAACGAACTCACACTGGAATCAAATTGTTTTCTTGTGATATCTGTGATAGCAGTTTCACCACAAAACATTATCTCCGTGTACATCAGAAAAAACATGAGAACTGA
- Protein Sequence
- MSEICRICLKKRNTMYSIYDKYSDEYNEPICDMIMYCASVIIEKEDGLPNLLCHTCKARLGTAYLFKRDCEESENKLCQKRQTVQINGTNYVRKNINFKNDEKPTEADTSLNTPYAELIKQELEESEKIIPKNIPKKPRRPRPKNYYCYGCSIMFSTKSGLDTHMSENHPDQKFVCNLENCNKQFIDWIKYSEHLKLDHSVENCFTCRKCQTNYQQKAYLDRHIFTQHGDRPYVCEHCPERFQMAKALERHMNMHTEKYKCKYCDKCFPSESILETHRRIHNTEDSYGCDDCDEKFSTKLFLKRHTCKKIRKAEENKKVKRHLCPYCAKRFSRPFLLTNHILIHTGVKSFKCDYCEYRCSTKESLASHVRIHTGERPFKCSYCEKDFRQKSNLTIHERFHTGHRPYICSTCQKGFTSSNDLKVHERTHTGIKLFSCDICDSSFTTKHYLRVHQKKHEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -