Basic Information

Insect: Brachynemurus nebulosus
Gene Symbol: -
Assembly: GCA_035578155.1
Location: JAPWDM010000001.1:17807743-17824942[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0024 0.13 14.1 1.1 1 23 354 376 354 376 0.97

2 9 2e-06 0.00011 23.9 1.2 1 23 418 441 418 441 0.96

3 9 0.00069 0.038 15.8 0.0 1 21 552 572 552 573 0.96

4 9 0.00022 0.012 17.4 1.5 2 23 618 639 617 639 0.96

5 9 2.6e-05 0.0014 20.3 1.5 1 23 645 667 645 667 0.98

6 9 0.00028 0.015 17.1 3.6 1 19 673 691 673 696 0.91

7 9 2.8e-07 1.5e-05 26.5 0.7 1 23 702 724 702 724 0.99

8 9 7.1e-06 0.00039 22.1 2.9 1 23 730 752 730 752 0.99

9 9 6.2e-07 3.3e-05 25.4 1.0 1 23 758 780 758 780 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0024	0.13	14.1	1.1	1	23	354	376	354	376	0.97
2	9	2e-06	0.00011	23.9	1.2	1	23	418	441	418	441	0.96
3	9	0.00069	0.038	15.8	0.0	1	21	552	572	552	573	0.96
4	9	0.00022	0.012	17.4	1.5	2	23	618	639	617	639	0.96
5	9	2.6e-05	0.0014	20.3	1.5	1	23	645	667	645	667	0.98
6	9	0.00028	0.015	17.1	3.6	1	19	673	691	673	696	0.91
7	9	2.8e-07	1.5e-05	26.5	0.7	1	23	702	724	702	724	0.99
8	9	7.1e-06	0.00039	22.1	2.9	1	23	730	752	730	752	0.99
9	9	6.2e-07	3.3e-05	25.4	1.0	1	23	758	780	758	780	0.97

Sequence Information

Coding Sequence: ATGAATGCAACAGATGATACAAATAAAGAATTGTTGGATAATGttcaagttaatattagcaatgGAGATGGTCAttacataaatacaaataatgcGTTACTTCAGCGTATGGATTCTGGAGGATTAATTGATGTGGCAACCGCGGCCGGTTTATATTTATCCGGCGGTTCCGGAGTTTTACCACCACCGGATCAGTATCCACCGGAGGAAATACTTTCCGCACAAGATCTCACTGAAGAAGATAGAAAATTAGCTGCAGCGTTGGTTGCGGTACAGTTGGTGCAACAGCAGAAGCAACAGCAGCTGTTATTACACGATTCAGCCATATCATCGGCGGCAAATAACGCAGAAGTCGCTAATAATTCATTATCTAACATCACAAATATTGTTCACAatgaTAAGATCACTCTTCATGAAAATTTAGCGGATACTCAATCATTGATTTTACAACACGGTACGAAGGGTGTGGACTCGGTGGTTTCAAATTTTGGTTGTTCGTTAGACAATAGTCGAATTTCGAcggttaaattaaataataatttatcgtCTAGTAATGTGTCGAACGTGGCGAATCATAATTCTAGAAAAGGTGCTGGAGGTTCTTATAAAAGTAGAACTGTTCGAAAgacaacaaataaaaataatgtgTCACCTGGGTCATCGCGGTCAAAGTACATTTTATCGAGCACATCGCCAGTGTCAACGGTTCTTAAACAAGAAGACACATTCgatttaacaattaaaagtgAAGATGTTGACTTATCAGATTTTAGTGATGATCTAGATTCCGATTTTGATGACATCATTGAAACACATTCGGCTAGAAAGAGTTTACCCCACAAAAAACGGATATccagaaaattaaaaactagtCCCACGAAAGGAAGCAGTAATTCGAAGACTAACCAAAATTCGTACCCGAAATGTGTGAAGTGTGTGAAGTGTGGAGATCAGATTCGGAGTCAAACATCACATAATGATCACAAAGATAAGTCGCATAAAGAAAATGGTATGTTGGTGGATTCTTCGGGAATGCAGCTTCGAAATAATTTAGTAACATTTGCGTGTCAACTCTGTCCCCAAATGTTCAACAGccagttgaattttttcgaaCATCTAAAAAGACATTATGAACCAGTTGTTGAGATCAACGAGGATAGATCACAACAAATCTTCTCATCGGATAATAGTTCGAAACAGACGGATTCACAAAAATCAGCCACTGTGTTAGAATCATTTCGAGTTACATCTTTTAAATGCAACGAATGTGGAAAAATGTTTCGAAGACAGAAATTTTTTGAAGCACATATACGAGATGCACATCCAAAAGTAAACAAActTGAAATGGAAGAATTCAGTGAACCGGAAGATTTGATGGAGGGTATACGTGTTGTGGTCGACGATGAAAATGGTCAAACTGTCCTGTCGAATGGTCATGATCAGCAGGCACAGCACGCCACCATTGATCACATTGTGTCCTTGAGAAATTCGAATCCTCATCAAATTTTGGCAAGTTCAAATATAATTGTGAATGATTCAAAAGTTTGGTATCGAGAGGATGATGAATTACATGCTACCGAAGCTGATTTACAGGAATTAGAAGCACAGCAATTAAAAGAACAACAAATCCAACTTCAAAATTCTCTTACGTCATACGTGTGTAGTATGTGTGGCGCCATCTTTGATCAACGCGTGTATCTAACGCAACACATGAATGAATGCTATTTGGTTTTGAAACAAGAAGCAGAATTATTGAACTCATCACCTCCCGATGATGATAAGTTAAATTTCCCGCTTGATGGGGTTaaagATTTGAATAAAGGTAACAAACGTAAGAAAAAGGGACATTTGATGTGCACTGTTTGTGGCCGTATTTTTAATCATCGAAATTCACTTGTGTATCATTTACGTAGCCATTCGGGTGAACGACCGCATCAGTGTGAACAATGCGGGAAGAGTTTCTTTGCAACAAGTGCGCTCAagGTTCATATGCGCCTTCACTCTGGTGATAAACCGTACAAATGTGAATACTGTGGACGACATTTTCGACAGTGGGGTGATCTCAAATATCATTGTATCTCAATACATTCAAATCAACGACAATATCAGTGCGAATATTGTGGAAAAGATTTCGCCCGAAAATATTCGTTAATTGTGCATCGACGGATTCATACTGGCGAAAAGAATTATCAATGCGAATATTGTAAGAAAACGTTTCGAGCTTCTAGCTATTTACAAAATCATCGAAAAATTCATACAGGGGAAAAACCTCATCCGTGTGAAATTTGTGGGAAACCGTTTAGAGTACGATCTGATATGAAACGACATATGAATACGCATAATCGAGATCGGTTTAATAAAGGAAGTTCAACTGATATAAAAACAAATCTTTCATCGGATTCTGATCATGCAGAAAGTAATGCTGAAACCACTCCATCAGTCACGTCAACATCACTAccaattaaagaaaaagaaattcatATACCCATTATCCCAAAAACGGAGACATCAATTAAAATCGACACTCAAGAAGTATTACAAACACCAAAAGAGGAGGATATATCGGGAACTTTGTACACGGTACCTGCTGATCCGCTTACAATTAGAGAGGGTAATAATACGGTTTACGTTTGGCCGGTATATATGAGTTAA
Protein Sequence: MNATDDTNKELLDNVQVNISNGDGHYINTNNALLQRMDSGGLIDVATAAGLYLSGGSGVLPPPDQYPPEEILSAQDLTEEDRKLAAALVAVQLVQQQKQQQLLLHDSAISSAANNAEVANNSLSNITNIVHNDKITLHENLADTQSLILQHGTKGVDSVVSNFGCSLDNSRISTVKLNNNLSSSNVSNVANHNSRKGAGGSYKSRTVRKTTNKNNVSPGSSRSKYILSSTSPVSTVLKQEDTFDLTIKSEDVDLSDFSDDLDSDFDDIIETHSARKSLPHKKRISRKLKTSPTKGSSNSKTNQNSYPKCVKCVKCGDQIRSQTSHNDHKDKSHKENGMLVDSSGMQLRNNLVTFACQLCPQMFNSQLNFFEHLKRHYEPVVEINEDRSQQIFSSDNSSKQTDSQKSATVLESFRVTSFKCNECGKMFRRQKFFEAHIRDAHPKVNKLEMEEFSEPEDLMEGIRVVVDDENGQTVLSNGHDQQAQHATIDHIVSLRNSNPHQILASSNIIVNDSKVWYREDDELHATEADLQELEAQQLKEQQIQLQNSLTSYVCSMCGAIFDQRVYLTQHMNECYLVLKQEAELLNSSPPDDDKLNFPLDGVKDLNKGNKRKKKGHLMCTVCGRIFNHRNSLVYHLRSHSGERPHQCEQCGKSFFATSALKVHMRLHSGDKPYKCEYCGRHFRQWGDLKYHCISIHSNQRQYQCEYCGKDFARKYSLIVHRRIHTGEKNYQCEYCKKTFRASSYLQNHRKIHTGEKPHPCEICGKPFRVRSDMKRHMNTHNRDRFNKGSSTDIKTNLSSDSDHAESNAETTPSVTSTSLPIKEKEIHIPIIPKTETSIKIDTQEVLQTPKEEDISGTLYTVPADPLTIREGNNTVYVWPVYMS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -