Bneb014791.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000003.1:67865138-67866917[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 3.4 1.8e+02 4.2 8.7 1 23 163 186 163 186 0.97 2 14 0.00065 0.035 15.9 0.7 2 23 192 213 191 213 0.97 3 14 0.0034 0.19 13.7 4.4 3 19 223 239 221 244 0.87 4 14 2.4e-05 0.0013 20.4 1.6 1 23 250 273 250 273 0.97 5 14 0.15 8.4 8.4 0.1 2 23 282 302 281 302 0.95 6 14 0.045 2.5 10.1 5.4 2 23 310 332 309 332 0.97 7 14 0.00012 0.0066 18.2 1.0 3 23 343 363 341 363 0.94 8 14 3.3e-06 0.00018 23.1 1.5 1 23 369 392 369 392 0.96 9 14 0.17 9.2 8.3 0.2 2 23 402 422 401 422 0.95 10 14 0.11 5.7 9.0 4.6 1 23 429 452 429 452 0.97 11 14 1.1e-05 0.00061 21.5 1.7 3 23 463 483 461 483 0.95 12 14 0.0048 0.26 13.2 2.3 1 23 489 512 489 512 0.97 13 14 0.00031 0.017 16.9 1.9 1 23 518 540 518 540 0.97 14 14 2.3e-06 0.00013 23.6 1.6 1 23 546 569 546 569 0.97
Sequence Information
- Coding Sequence
- atggcaTTAAATGTTACAACAAAAGACTTTAATGAAATATGTCGTGTTTGTTTGAAACCATCACAAAATTTGCTGTCAGTGTCATTATTTCAAATTGTTGAAATGATGACTGCGTGTACTTCGGTTCAGattTGTATAAATGATGGTTTACCGAACCAACTGTGTGAAGATTGTTACGATGACCTGCGAAATTCCTTCGATTTTAAACAGCGTGCCGAAAAATCCGATTCTGACCTTCGACAAATTgttcaaaattgtaaaaatgaaaatagtacCCGAATGGAATATCCTGAAAATGACACAGATAACGATAGTGTTAAAGCTGAACTCAAACCGGATGTTATTAATGATGATTTTGATGTGAAAAATGAAGCGTTTGAAGAAGTTTCCACGCCAAAATCGGAAGAATTATTGTCACCGTTTAATAATTTGGATGAAGATTCACGGGAATCAGCGGAAAATGAACAGTCGCTGAAAAAAGTGAAGCACGAATGCGCTGAATGCGATTTCACTTGCGAACACATACATCACTTGGGTTTACACATGAAACGTTACCATCAAACGAAGGGCCAATCATGCACCAAATGTAGCATGATATTCTATTTACCCGAAGAACTGCAGCGCCATCTGAAAACGCATGCGtacaaatcaaaaaaatcaaaatgttgtGGACTCTGCAATAAACCTTTCACAACCCGAAGTAATTTATTGAGACATTGTATATCTGTTCACGGCACAGAAAAACCCCATAAGTGTAATAAATGTGGCGCCACTTTTAAATTATACAGTGCTCTTACGGTGCATCAACGTTCCGCCCACCCGAAAGGTTCCGATCTACGAGTGCCATGCGATATTTGCGGAAAACGTGTCCTCAAACGCGAAATTAAAAGACATTTACAAATACACAGTAGCGATCGCGAAATGGTCCAGTGTAGTCAGTgcgataagaaatttttacacCAGTGCTCGCTAAAATTACACATTCAACGCTCGCACGAGAATAAACCGCGCGAATATAAACATCTGTGCACAATTTGCGGCAAAAAATTCGGCACACGTAACGATTTAGAACGACACGGATCAGTGCATCGAAACGATCGTCCGTTCGAGTGTCCGCAGTGTGGTAAAGGCTTTAAATTGAATCACAATTTGAAGAGTCACATTAAACAGATCCATTTGAACATGCGCGGTGATAATCGGATACCGTGTAAAGTCTGCGGGAAACTGATTTCAAAAACGAACATGAAAACGCACTTGGCGACGCACAAGGAAGTGCGTGACGTCTACAGTTGTACCCGCTGCACCAAACAGTTCCTGCATCAGTTCTCGTTGGAACAGCACATCCTGAAGTTTCACGAGAAGGTTGTGCGTGAGTTCCAACATTTGTGCAATATGTGCGGTAAAGGATTCAACACGAGGACCGAACTCAAGATTCATATGTTATCGCACAGTGACGAGAAGACTTTTGAGTGCCAAACGTGCGGTATGAAGTATAAAACAATGCACGGGCTACGGTATCACGTGAAGTcggtccatttaaatttgaaaccACATCCGTGTCCGGTATGTTTACGACATTTTTCCACTAGAGGCGTAGTGGAACGACACATGCGCACTCACACCGGTGAACGGCCATTTTCGTGTAATCTGTGCGAGAAATCGTTTAATCAGAAGAGTACGTTGACGACACATTTACGCCTGGTACATTCAGCATGA
- Protein Sequence
- MALNVTTKDFNEICRVCLKPSQNLLSVSLFQIVEMMTACTSVQICINDGLPNQLCEDCYDDLRNSFDFKQRAEKSDSDLRQIVQNCKNENSTRMEYPENDTDNDSVKAELKPDVINDDFDVKNEAFEEVSTPKSEELLSPFNNLDEDSRESAENEQSLKKVKHECAECDFTCEHIHHLGLHMKRYHQTKGQSCTKCSMIFYLPEELQRHLKTHAYKSKKSKCCGLCNKPFTTRSNLLRHCISVHGTEKPHKCNKCGATFKLYSALTVHQRSAHPKGSDLRVPCDICGKRVLKREIKRHLQIHSSDREMVQCSQCDKKFLHQCSLKLHIQRSHENKPREYKHLCTICGKKFGTRNDLERHGSVHRNDRPFECPQCGKGFKLNHNLKSHIKQIHLNMRGDNRIPCKVCGKLISKTNMKTHLATHKEVRDVYSCTRCTKQFLHQFSLEQHILKFHEKVVREFQHLCNMCGKGFNTRTELKIHMLSHSDEKTFECQTCGMKYKTMHGLRYHVKSVHLNLKPHPCPVCLRHFSTRGVVERHMRTHTGERPFSCNLCEKSFNQKSTLTTHLRLVHSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00239703;
- 90% Identity
- -
- 80% Identity
- -