Bneb024882.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- L
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000007.1:34269506-34285775[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 7e-05 0.0038 19.0 2.2 1 23 81 103 81 103 0.98 2 24 3.3 1.8e+02 4.3 3.2 1 23 109 131 109 131 0.97 3 24 2e-06 0.00011 23.9 2.3 1 23 137 159 137 159 0.99 4 24 0.00043 0.023 16.5 0.2 1 23 165 187 165 187 0.98 5 24 0.11 6.1 8.9 0.1 2 23 274 295 273 295 0.96 6 24 0.0025 0.13 14.1 0.3 1 23 324 347 324 347 0.96 7 24 0.065 3.5 9.6 2.2 3 23 395 416 393 416 0.91 8 24 3 1.6e+02 4.4 0.2 1 21 430 450 430 453 0.89 9 24 0.01 0.55 12.2 0.3 3 23 499 520 498 520 0.95 10 24 0.056 3.1 9.8 0.1 1 23 588 610 588 610 0.98 11 24 0.0081 0.44 12.5 1.9 2 23 647 668 646 668 0.95 12 24 0.00064 0.035 15.9 0.9 1 23 676 699 676 699 0.93 13 24 2.6 1.4e+02 4.6 0.1 2 23 705 727 704 727 0.95 14 24 3.3 1.8e+02 4.3 0.5 9 23 746 761 744 761 0.94 15 24 0.21 12 8.0 0.9 1 23 779 801 779 801 0.97 16 24 0.0036 0.19 13.6 0.5 1 21 805 825 805 828 0.95 17 24 0.3 17 7.5 0.3 3 23 885 907 884 907 0.90 18 24 0.046 2.5 10.1 5.1 2 23 921 943 920 944 0.93 19 24 0.011 0.61 12.0 0.1 1 23 953 975 953 975 0.98 20 24 4.1 2.2e+02 4.0 1.3 3 23 984 1004 983 1004 0.96 21 24 0.0041 0.22 13.4 1.1 1 23 1136 1158 1136 1158 0.94 22 24 2.5 1.3e+02 4.7 0.2 1 23 1166 1188 1166 1188 0.95 23 24 1.6 85 5.3 2.0 1 23 1195 1217 1195 1217 0.94 24 24 0.022 1.2 11.1 0.5 1 23 1236 1258 1236 1258 0.98
Sequence Information
- Coding Sequence
- ATGATGTTGTTTAAGGGTAAAAGTAACCGTTTGGAATGGCTTATTGGGAGATTACAACGGCCACGCGTGATGCAGTCCagagATACGTTGGAAACGGAAGCTGGTGGCAGTTGGCAATCGGAAAGTGCGGACGAACGACGCACACCACCCACACCATCATCGTGTGCCACACCGAATTCGGCCACCGAATTGCCGGAAATAGATTTGACTTATACAATCGGCGTGACCGAAGCGACACCGTATTCCTGTCAGTTTTGTACGAAAGCGTTTCCACGATTGAGTTACCTGAAGAAACATGAACAGACTCACAATGATCAAATGCCATTTAAATGCGATTTCTGCGCACGACTGTTCAAATACAAACGTTCGCGTGATCGCCATGTAAAATTGCACACAGGCGACAAGAAGTATCGTTGCACGTATTGCGAAGCGGCATTTTCACGAAGCGACCACTTGAAGATTCACTTACGCACTCACGATAACGGTAAACCATTCCAGTGTGTCACCTGCAATCGGGGATATAACACAGCTGCGGCGCTCACATCGCATATGCAGAACCACAAGAAGCAGCAACGCTTGCGGCAAGAACAACAGCAACAAGAACAACAAGAAAAACAGCAAAAAGTGGAGGAAACCGCCACTGACTCAACTCAACAGCAATCGCAACCCCAAGAATCTACAAGTCCAACAATCAAGTCGCAAGAATTGTCACCGAAAAGTGATTCCCAGATGCAAACTCCCACGGAATTACCGACCAGTGGCAAAATTTCAGCTTCGTCTTCGTCGTTCGAACTACCAACCATGTCCAATTTGACACTCACCTGTCAGATATGTGGACAAGTGATGCAATCGCCAGCACAACTTCAAGATCACGCTAAGTATCATACGATGTTTCCAGCATCACAATCGGAACTTACGTTAGAAAATTCGATGTTACCGGTACAATCGGAAGCGCCGAAAACGTCTAGATTTACTTGTACGTACTGTTCCGAGGAATTTAACACGCTCGAAGAATTAAGCATACACGTGGAAAAAGAACACTTCCCCATCATAAATGGTCGACATCAGTCTGGCGACCAAGCTAACACACCTACCACTTGTATCCTTTGCCCTATGCAATTTTCCAACATACAATCGTATTATGTACATTTGGCCGTGAATCATCGTTTTGTGGAAACCGCATGCCCTTTCTGCCCACAAAAATTTGAGACCCCCAAACAACTGCACGATCATTACTTTCACGTTCACAAATCAAATCTATTTCGGGGCCAGGCGATGGACTCCAAATTTACTTGTACTTTATGTTACGAGGATTTCGATATGATGGAACAGTTGATGATGCACGTGGGGGAGAAACATTATTCCATGAGGGTACGGCAACCTGGGGACACATCCGTCACACCCTCTACCTGTTGCGCCTGCCCATTTAAGTTTACTAACGTGATAACGTACTCTATCCATTTGCTTATGAATCATGGCGCAAGACtaagtttgtgtcctttctgcTCACAAAGTTTCGACAACTCCGACCAATTGGCCGACCATTTCCTTCGCGTCCACCAGTCAAGTCTACCCGCGGAGCAAGTAGGACCAGCCGACTTGAGCCGGAAAACAAAATCGCATCCATACTTACAAATGGAACCTTTTGCAAAACGTGAGAGACGATCAAACGGGAATACACTGCATACTGAATCCACTTCCACCTCCCATTCCCAAGCTTCATCAACTTCCACGCCGACTCAACTCGAATATCCCAACACATTTGTAtgtaataaatgtaatataGCGTTACCTGATTTCGCGGCATTTCAAGACCACTTAAAAATCCATTTAAACCCAGTGGAAAATATTCCAGCGGCTATGGCCGCTGGTCAGTTACCTGACGCGAATCAACTAAGGCCGAATCTACTCCAGATTCTAAATAACGCCGCCGTTTTAACGTGTCAGATTTGTAAGATGCACTTTACGGAATTAGCTCACCTAGAAAAACATGTTATGGGCCACTATTTGGAGATAATCACCGATTACAATTGCAAAAATTGTAGCAGAAGTTTCGTTAACGCTGATCAAATGCGAAAACATTATTTGGACGTGCACACTCAACAACTTCTGCGATGCGAATTATGTAAGGAGTTATTTGATTCGGCAATGGCCATTCAGattCATTACGCTACCAAACATAAAGGGGAAATTCGTCTGTACAATTGTATTGCTTGTCAGGAGAGCCGACGTTTCACGTTTCGCACGGAAAAAGCTTGGAAAAGTCACATGAAAACTGTTCACAACGATCTGATAATGTCACTGAAACCGCAGTCAACAAACCGGGAGCGATCATTTCAATGCAAACTATGTTTCAGAGAGTTCAATTCTGATATGGAAGTACAACTCCATTCCAGAGTTCACTTTGAACCGTTCAGATGTCCAATCTGTCCACAAATATTCGAAGTCGAATATCAACTTGAGATGCATATGCAATGTTTGCATCAAGGAAATCAGATTCCCGACAGTTCGAACGGCGAAGAATCCAATCAACGCTTGCCACTCCCAACCGATCTTCCGTATCCACCGATAGCAACCAAACCATCCATGACGCTTCACGATCGCGGCACAAACTGCATCAAACTCGAAACGCCCGACTACAAAATCAACAGTTGCGATCAGTGTGGACGCAACGATTTCACAAACGAATCCGAACTGATCTCACATCGAAAAATAGTGCACAATGTGAAATCGATACCGAAGAACGGTGTGGTCAGTTTACACTGCGCGTACTGTGACAAAAAGAACTTCAAATCGCGAACGGAATTGGAAACGCATATGAAATCGCATCATCAAAATAGTGACGCGTCAGTGAAACACAAGTGCAATATCTGTGACGAGTTGTATCCGTCTGCCGCGCTTCTGGCCGAACATAAATTGACACATGTCCGAGTTGTGGCCGGCAACAATTGTACACACTGTAAAGCCACAATACGCACAGACGAGCAATTCTACGCGCACTTAATTCAACACAACAACacaaataacaataacaacacTCAAAACAATCAAATTAATTTACCGCTGCCGTGCGTGATATGTCGACAGACGCTCAATGCGAATATTGAAGTCCAAAAACACGCTCAATTCCATATCCGTAACACCGCGCCCATCAATATAATCGAACTACAATGTGCCGTCTGTTCAAAACCCTTGGAAAAATCCAACATGGCGTCGAACAATCAAAATTCCAATAATGTTCTATGTAAAGACTGCTTCGCTCACCACAACTACAGCTACCCTCCAGACATTCCAACTCAAAACATTCAAAAACACCTCGAAACGCTCCAAAATTCAATCACTTACAACACGGAAACGGAACGACACAACCACCTCCCAACCCATCTGGTTACCGACGTGTCTCAACACGACTGCAACATTTGCCGTAACAAATTTTCGTCCGCATCCAAATTACAGATCCATTTAATCGAACACTCGTTCAACGGTATCGGCAGTTACACATGCTATTTCTGTTCGGCGGTTTTCACAGCCGCTAAAGGTATACACGCGCATATTGCCGAGCACGGTTTGGAGAATCGACCGTACGATTGTTCGAACTGTGAATCGCGATTCTTTTTCAGTGCCGAACTCGAGCACCACAGTTACGTGCATTTGCAGGACAGTATGCAGGCGCACAAACAGTCGAATTCGTTCCAAATGGAATCGTATCAGTGCATTGAATGTCCGCACAGCTTTACCGACGAGATCGTGTATATGGCCCATATGAGATCCCATCAACAGAGTAAAAATCGCAGCGATAATAATGCCGGTTTAGAAAACGTAGGAGGTGAGGACAATGATCAGCCAGTTGGCACGTCTACCAATTCGGATAACGAATATATTGAAGTTGAGTCGCCAATTccagtaaaaaaagaaaatccatAA
- Protein Sequence
- MMLFKGKSNRLEWLIGRLQRPRVMQSRDTLETEAGGSWQSESADERRTPPTPSSCATPNSATELPEIDLTYTIGVTEATPYSCQFCTKAFPRLSYLKKHEQTHNDQMPFKCDFCARLFKYKRSRDRHVKLHTGDKKYRCTYCEAAFSRSDHLKIHLRTHDNGKPFQCVTCNRGYNTAAALTSHMQNHKKQQRLRQEQQQQEQQEKQQKVEETATDSTQQQSQPQESTSPTIKSQELSPKSDSQMQTPTELPTSGKISASSSSFELPTMSNLTLTCQICGQVMQSPAQLQDHAKYHTMFPASQSELTLENSMLPVQSEAPKTSRFTCTYCSEEFNTLEELSIHVEKEHFPIINGRHQSGDQANTPTTCILCPMQFSNIQSYYVHLAVNHRFVETACPFCPQKFETPKQLHDHYFHVHKSNLFRGQAMDSKFTCTLCYEDFDMMEQLMMHVGEKHYSMRVRQPGDTSVTPSTCCACPFKFTNVITYSIHLLMNHGARLSLCPFCSQSFDNSDQLADHFLRVHQSSLPAEQVGPADLSRKTKSHPYLQMEPFAKRERRSNGNTLHTESTSTSHSQASSTSTPTQLEYPNTFVCNKCNIALPDFAAFQDHLKIHLNPVENIPAAMAAGQLPDANQLRPNLLQILNNAAVLTCQICKMHFTELAHLEKHVMGHYLEIITDYNCKNCSRSFVNADQMRKHYLDVHTQQLLRCELCKELFDSAMAIQIHYATKHKGEIRLYNCIACQESRRFTFRTEKAWKSHMKTVHNDLIMSLKPQSTNRERSFQCKLCFREFNSDMEVQLHSRVHFEPFRCPICPQIFEVEYQLEMHMQCLHQGNQIPDSSNGEESNQRLPLPTDLPYPPIATKPSMTLHDRGTNCIKLETPDYKINSCDQCGRNDFTNESELISHRKIVHNVKSIPKNGVVSLHCAYCDKKNFKSRTELETHMKSHHQNSDASVKHKCNICDELYPSAALLAEHKLTHVRVVAGNNCTHCKATIRTDEQFYAHLIQHNNTNNNNNTQNNQINLPLPCVICRQTLNANIEVQKHAQFHIRNTAPINIIELQCAVCSKPLEKSNMASNNQNSNNVLCKDCFAHHNYSYPPDIPTQNIQKHLETLQNSITYNTETERHNHLPTHLVTDVSQHDCNICRNKFSSASKLQIHLIEHSFNGIGSYTCYFCSAVFTAAKGIHAHIAEHGLENRPYDCSNCESRFFFSAELEHHSYVHLQDSMQAHKQSNSFQMESYQCIECPHSFTDEIVYMAHMRSHQQSKNRSDNNAGLENVGGEDNDQPVGTSTNSDNEYIEVESPIPVKKENP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -