Bneb011496.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- ZFAT
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000002.1:37022683-37023756[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.13 7 8.7 2.6 2 23 77 98 76 98 0.95 2 10 2.6e-05 0.0014 20.3 4.1 1 23 104 126 104 126 0.98 3 10 0.074 4 9.5 0.3 1 17 133 149 133 150 0.89 4 10 0.0014 0.074 14.9 3.7 1 23 161 184 161 184 0.96 5 10 1.6e-05 0.00088 21.0 0.3 2 23 190 211 189 211 0.97 6 10 8.2e-05 0.0045 18.7 4.5 1 23 220 242 220 242 0.99 7 10 5.6e-05 0.0031 19.3 0.2 1 23 245 267 245 267 0.98 8 10 1.2e-05 0.00063 21.4 0.2 2 23 274 295 273 295 0.97 9 10 6.7e-08 3.6e-06 28.5 0.6 1 23 301 323 301 323 0.99 10 10 0.00017 0.0094 17.7 0.3 1 23 329 352 329 352 0.97
Sequence Information
- Coding Sequence
- ATGATATATCCATTTGTGTTGTACCATAAAGTAACATTAAGTGactctaaaaatttttggttcaGACGAAGAGAAGTATTAGTAATTACATACGATATAATTACGCTAATTAGCAATGATTCAACTTCCAGGAATGAGGAGTGGAATATAAAACAAGAGCTTGTAGAAATAAAACAAGAATATCCAGACGAAGCGAATGTTGGCTATCTGAACGAAAATGGAAcgataaaatgtaaaatctgTAGTAAGacatttttaaatgagaaacgATGGAAAACACATTTTAACACACATTTAAATATCCGACCATTTTCATGCGATTATTGTAATAAACGTTTCAAACTCAAAACGCATCTATCAGCCCACTTAAAAATTCATAGTGAAGATCGTGAAAAATATACGTGCGAAGTTTGCCATAAACAATATGCAACACTCAGTTCAGTGACAAGATGTCGCAAGGATCACACGTTAAATTTCGCATTCACATGCTCCAATTGTGGCAAAGGTTTCCATCATCGTAGCAAATTAGATATACACTACGAAGTGAATCATAACGCCGTCAAACAACGTTGTGAAGTTTGTAATAAAGTATTCGCCAATAAAATCAATTTGGCAACGCATGCACGACAACACGATCCAAATTACGTAATACCCGAATTTAAATGCGAAAAATGTGGTAAAAGTTACAATTCACGTAAATTTTACAGTCGACATTTAAAATCACACGAGGGATTCCCCTGTGATGTTTGCGGGAAAGTGATAAGTTACGAGCAtggattaaaaaatcatatgttAATACATAAAGGCGAGAAACCATGGAGTTGTGATGTGTGCGGAAAAAGTTTTAATCAAAAGGCGATTTTAACCGTACATCTGCGAACGCACACGAACGAAAAACCGTACGAATGTAAGGAATGTGGAAAACGATTTACACAACGTAGTCCACTAGTCATTCATATGCGATCCCacaccggtgaaaaaccatacaattGCCGATTATGTCCCGCTGCATTTGTCAGTAAAAATTATCTCCGAGTTCATATGCAAAGTTCCCATAACTCGTCCgatgtttaa
- Protein Sequence
- MIYPFVLYHKVTLSDSKNFWFRRREVLVITYDIITLISNDSTSRNEEWNIKQELVEIKQEYPDEANVGYLNENGTIKCKICSKTFLNEKRWKTHFNTHLNIRPFSCDYCNKRFKLKTHLSAHLKIHSEDREKYTCEVCHKQYATLSSVTRCRKDHTLNFAFTCSNCGKGFHHRSKLDIHYEVNHNAVKQRCEVCNKVFANKINLATHARQHDPNYVIPEFKCEKCGKSYNSRKFYSRHLKSHEGFPCDVCGKVISYEHGLKNHMLIHKGEKPWSCDVCGKSFNQKAILTVHLRTHTNEKPYECKECGKRFTQRSPLVIHMRSHTGEKPYNCRLCPAAFVSKNYLRVHMQSSHNSSDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -