Bneb017763.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000005.1:1390277-1392234[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.019 1 11.3 1.6 1 22 147 168 147 168 0.91 2 10 2.3e-06 0.00013 23.6 2.0 1 23 242 264 242 264 0.98 3 10 1.1e-05 0.00061 21.5 5.7 1 23 270 292 270 292 0.98 4 10 7e-08 3.8e-06 28.4 1.1 1 23 298 320 298 320 0.98 5 10 6.9e-06 0.00037 22.1 0.1 1 23 326 348 326 348 0.98 6 10 9.5e-05 0.0052 18.5 1.4 1 19 354 372 354 375 0.95 7 10 0.027 1.5 10.8 0.5 1 23 382 404 382 404 0.94 8 10 0.00017 0.0092 17.8 10.0 1 23 410 432 410 432 0.97 9 10 3e-06 0.00016 23.3 3.1 1 23 438 460 438 460 0.99 10 10 3.1e-06 0.00017 23.2 1.5 1 23 466 488 466 488 0.98
Sequence Information
- Coding Sequence
- ATGGATTTAGGAAATATTTGTCGAATTTGTTTACAACGTTCAGAAGATCGGATTGATTTGTTTTCTTCCGCAGCTGGATTTTCAATGATTTCAGAAGCAGTAATGGAATGTGCTCCAATACAaattTCATATGATGATAATCTACCACATTCAATATGTCAGGATTGTGTCACTCAACTGGAGATTGCGTACCGTTTTCGGGTACTTTGTGTGCAATCTGATCTCACATTACATCAGTTAGTGTCACAAATTGATAATGAAGAAGAATTCAAAGACAGTggatcagtaaattttaatggaaatgaaattgaaaatgaaataaaagaagaaGTCCCCACCGGTGATTTCGATAATGATGTAAAATCATTAGACAACTTTTTTAATGATACAAGTGAACAACTGTCACCTAAGCCAATGACTGCAAGGAAAGCACGGCCCTATATTTGTATTAAGTGTTctacaaaatttacattaaaaaataacctTCAGCGACATCAGAAACGTTGTTTAGCCGGAAAAATTAAACGGTGGCGAAAACTTCCTACTGGCGAAAATGTAGATGCAGTAGACgatgaattaaaaaatgaaaatgaatattCAGCAAACGATAATAGTCAAGATCAGGAAAATCAGTCCGTACGACGAATTCTTTGCCCTGTATGTGGTAAACTGATTAGTGCTAGCAATCGTGTTCACATGAAACTTCATACAGAGCAAAAACCCTACCAATGTACTGTATGTGAACAAAAATTTACTCATCCAGGAAATTTACGTGTACATATGACGAAGCACACAGGTGAACGTCCGCATCAGTGCAACACCTGCGGTAAATGTTTCAGGTTATTACCACAGCTTAGACGACATTTGAGAACTCACACAGGAGAAAAACCTTACGAATGTTCAAACTGTGGGCGAAAATTCACTAGCTCGGGAAACCTGAGTCGACATATGAAGATCCACACCGGTGATCGGCCCTATCAATGTAACATCTGCGACAAAGGCTTTATCCAGTTAGGATCATTGCAAGAGCACGAACTTACACATACAAATGAGACGCCATATGAGTGCAGTGGATGCGACAAGCGATTTAGAAGTAGAGCTGGGTTAAATAAACACGGATGTTATGACACAGACGGTAAACCTTACACTTGTGAACAGTGTAATTTATCCTTTTTGAGACCGTGGTTATTAAAGTCTCATAGTTTCATTCACACAGGAGCAAAACCCCATAGTTGTCACATATGTGGTAAGAAATTCAGACAGAGGCATCAGTTAAAATCGCATTTACATATCCATAGCGGGAGTAAACCATTTAAATGCTCTTTTTGTGATAAATGTTTTGCACTGAACGGGAATTTAAAGGTTCATATTAGAAGGCATACTGGTGAAACACCGTTTGAATGTTCAGTTTGTGGACGAGGGTTTTATGATTCTAGTAGCATGAGAAAACATAAACGTACGCATAAGGAATAA
- Protein Sequence
- MDLGNICRICLQRSEDRIDLFSSAAGFSMISEAVMECAPIQISYDDNLPHSICQDCVTQLEIAYRFRVLCVQSDLTLHQLVSQIDNEEEFKDSGSVNFNGNEIENEIKEEVPTGDFDNDVKSLDNFFNDTSEQLSPKPMTARKARPYICIKCSTKFTLKNNLQRHQKRCLAGKIKRWRKLPTGENVDAVDDELKNENEYSANDNSQDQENQSVRRILCPVCGKLISASNRVHMKLHTEQKPYQCTVCEQKFTHPGNLRVHMTKHTGERPHQCNTCGKCFRLLPQLRRHLRTHTGEKPYECSNCGRKFTSSGNLSRHMKIHTGDRPYQCNICDKGFIQLGSLQEHELTHTNETPYECSGCDKRFRSRAGLNKHGCYDTDGKPYTCEQCNLSFLRPWLLKSHSFIHTGAKPHSCHICGKKFRQRHQLKSHLHIHSGSKPFKCSFCDKCFALNGNLKVHIRRHTGETPFECSVCGRGFYDSSSMRKHKRTHKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00239830;
- 90% Identity
- -
- 80% Identity
- -