Bneb008371.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- ZFY
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000001.1:166907380-166910476[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00011 0.0062 18.3 2.9 1 23 131 153 131 153 0.97 2 12 0.00014 0.0075 18.0 4.6 1 23 159 182 159 182 0.96 3 12 0.00063 0.034 16.0 2.9 1 23 240 262 240 262 0.94 4 12 0.0092 0.5 12.3 5.7 1 23 268 291 268 291 0.96 5 12 5.7e-06 0.00031 22.4 0.2 1 23 321 344 321 344 0.93 6 12 0.011 0.6 12.1 7.1 1 23 350 373 350 373 0.96 7 12 0.17 9 8.3 0.2 3 23 381 400 379 400 0.92 8 12 6.1e-05 0.0033 19.2 0.2 1 23 406 429 406 429 0.96 9 12 4.6e-05 0.0025 19.5 0.1 1 23 438 460 438 460 0.96 10 12 5.2e-06 0.00028 22.5 2.1 1 23 466 489 466 489 0.96 11 12 0.00015 0.0081 17.9 2.3 1 23 495 517 495 517 0.98 12 12 0.041 2.3 10.2 0.5 1 23 523 546 523 546 0.92
Sequence Information
- Coding Sequence
- atgCCTTGTTCTTGTGTTGCGCGAACAATTTCAGAAACAGAACTAGATGAGTTACCACAAAAAATCTGTGAGGAATGTGTAAAATACCTTGAAAGTTTTTACGCGTTTAAAGAGAAATGTGAAAATTCGGAAAATTATTTAcgacaaattttattgaatgcaaaaaaacaaaattttgaaaatgacagTAGCTTCGTTCAAGAACCATCAAATGCCACAATCAAGAGTGAAATCAATTCAGATCAAGAGGCAATATCAACCGATCAGTTTCAAGACAATTTACGTAGCGATTCAGAAGATGATTATCCACTAacagaatttaacaaaaaagaagaaaatgaagaaaatgCCTCCAGTGAAACAAAATACCGAAAACGCTCGAAAAACAACCATAAATGTGATCAATGTGGTAAATCTTTCCCATATTCATATCGACTAAAACAACATAAAATTGTTCACAGCGATGAGAAAGACTTCTTTTGTGAATACTGttccaaatattttaaaacaaaaaaaagcctAAATCGACATTATCTTCGACTGCACAGCAAAGAATTCGGTAAAACTCGAGAAGAAGCAATATCAACCGATCAGTTTGAAGACAGTTTACATAGCGATTCAGCAGATGATTACCCACTAACAGAATATatcaaaaaagaagaaaatggagAAAGTACCTCCAGTGAAACAAAATACCGAAAACGCTCGAAAAACAACCATAAGTGTGATCAATGCGGTAAATCGTTCCCATATTCATACCGACTAAAAGAACATAAAACTGCTCACAGCGATGAGAAAGACTTCTTTTGTGAATACTGttccaaatattttaaaacagaaaaatgcTTAAGTCGGCATTATCTTCGAGTGCACAGCAAAGAATTCGGTAAAACTCGAGAAGAAGCAAAGCACCGACTAAAACGTGTCCGTATAAAACCACGACGCCGATCAAAAGATAATTACGAATGTGATAAATGTGGCAAATCGTTTGTGTTTCCATATATGTTGCGCAATCATCAAGCAGCCGTTCACAGTGACGAGAAAACGTTCTCGTGCGACAAATGTTCGAaacaatttcgaaaaaatttacacttacGGCAACATATTGATAGATGCCATAGCGAATCACCGCGCGATATTTGTAATATGTGCGGTAAATCGATAAAACGCATTTATATGAAACGACACATAGCCATACATCAAATGAACAGTTCGTTCGCGTGTTCCGAATGTGGAAAGGATTTTGACAAACGGGCACGTTTAGAGCAACACATGAAAATTGCGCATAATCAAATAATGACCGTACATAAGTATCTATGTACCGTCTGTGGTCGAAATGTAATATCACCGAAAGATTTAGAGAATCACATGCGTGTGCATACCGGTGAACGACCCTATCAATGTCAGATGTGTGATAAGAATTATAAAACATCATCAAATTTAAGTTTACATATTCGATTCACGCATAAAAATGAGCGACCATTCTCGTGTGATATTTGCTTTAAAGGATTTATATCACGTCAAAAATTAAATCGTCATAAACAGACGCATTCATCGTCACGAAATCACGTTTGTATCGTGTGTGGTAAATTATTTGGTTATGAATCAGTGTTAAAAAGTCATATGAAAATTTCACATAAAGTTTTTACCGAGACTAATTAA
- Protein Sequence
- MPCSCVARTISETELDELPQKICEECVKYLESFYAFKEKCENSENYLRQILLNAKKQNFENDSSFVQEPSNATIKSEINSDQEAISTDQFQDNLRSDSEDDYPLTEFNKKEENEENASSETKYRKRSKNNHKCDQCGKSFPYSYRLKQHKIVHSDEKDFFCEYCSKYFKTKKSLNRHYLRLHSKEFGKTREEAISTDQFEDSLHSDSADDYPLTEYIKKEENGESTSSETKYRKRSKNNHKCDQCGKSFPYSYRLKEHKTAHSDEKDFFCEYCSKYFKTEKCLSRHYLRVHSKEFGKTREEAKHRLKRVRIKPRRRSKDNYECDKCGKSFVFPYMLRNHQAAVHSDEKTFSCDKCSKQFRKNLHLRQHIDRCHSESPRDICNMCGKSIKRIYMKRHIAIHQMNSSFACSECGKDFDKRARLEQHMKIAHNQIMTVHKYLCTVCGRNVISPKDLENHMRVHTGERPYQCQMCDKNYKTSSNLSLHIRFTHKNERPFSCDICFKGFISRQKLNRHKQTHSSSRNHVCIVCGKLFGYESVLKSHMKISHKVFTETN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -