Bneb013999.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000003.1:38375512-38381977[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0081 0.44 12.5 1.7 2 23 209 231 208 231 0.94 2 20 0.079 4.3 9.4 1.0 2 23 238 259 237 259 0.96 3 20 3e-05 0.0016 20.1 1.6 1 23 264 286 264 286 0.97 4 20 0.027 1.5 10.8 1.3 3 23 294 315 292 315 0.94 5 20 1 56 5.9 0.3 2 21 326 342 325 345 0.74 6 20 0.0023 0.12 14.2 2.6 1 23 351 374 351 374 0.93 7 20 0.0029 0.16 13.9 0.8 3 23 385 405 384 405 0.92 8 20 0.062 3.4 9.7 4.1 1 23 411 433 411 433 0.97 9 20 0.00083 0.045 15.6 2.3 1 23 439 461 439 461 0.97 10 20 0.00059 0.032 16.0 0.3 1 21 467 487 467 488 0.94 11 20 0.014 0.75 11.7 2.1 2 23 676 698 675 698 0.92 12 20 0.037 2 10.4 1.2 2 23 705 726 704 726 0.96 13 20 3.7e-06 0.0002 23.0 1.4 1 23 731 753 731 753 0.97 14 20 0.38 21 7.2 2.4 3 23 761 782 760 782 0.94 15 20 5 2.7e+02 3.7 0.1 2 11 792 801 791 811 0.81 16 20 0.00023 0.012 17.4 1.9 1 23 817 840 817 840 0.93 17 20 0.069 3.8 9.5 0.9 3 20 851 868 850 871 0.92 18 20 0.002 0.11 14.4 2.9 1 23 877 899 877 899 0.98 19 20 0.29 16 7.6 2.6 1 23 905 927 905 927 0.98 20 20 1.9e-05 0.001 20.7 1.5 1 23 933 955 933 955 0.97
Sequence Information
- Coding Sequence
- ATGCCTCTTAAAAGAGCTGATCTTGATAAAATTTGTCGTATGTGTTTATCGTTTAGAAAAGAAATGTTGACTTTACACGCACCAGAGGTTATAGAAATGATAAGGAACTGTACTGGCATTGAGGTCAAATTAAATGATGGACTTCCTCAGACTATATGCTTTGAATGTTCCGAACAAATGCATCAGTATTCAGCATTCcgtcaaaaatgtaaaaatgccGATAAAATATTGCACCAACTAATAAACGAAGATGATAACGATGATAACTGCGACTTTCTTGATGCAAACGATAGAACAATTTCTCCAAATGTTACAAACGAATTGGAAGATGATATAAAAGAAGAACCGTCTGACACTGaaaataatAGGCAATCTACTTTACCAGTAAAAACAGAGTTGGTAGAGTCAGAAACTCCAGAGTCATTGAAACAAGAAAATATAACAGACGCAACTGATTCAGGAATACtagaagaaaataaatattatattaaagaCGAAAATTTCGATAACAAATTTACAAATGATAAAGATGAATTTGAAAGTTACTTTACTAATACAAATACTGAAATGGAAGAAATTAAAGAATCGAGTCATTTAAAAGAAcatagactcaaaaagaaacaaaaatgtgaTCAATGTTTTCGAGCATTTCGAAAACCATGCGAACTAGCAAAACATTTAAATGATGTGCACAAAAGGAAAAAGACAATTGAATGTCAAGTATGTAGCAAAACGTTTCATCTACAAATTCAGTTAGAtttacacttaaaattacattttaaaacaaaacatatttgTAATGTATGTGGCAAAGAGTTTggaaaaagttcaaaattattacgacaccaaaaaatacatgaaaatcgcgagaaaatattttgtttacattgcGATAAAATATTCATCAGTGACGACTCATATAAAACGCATGTTAAACTTTACCATAACACCGAATCGGGCGGTAAAGAGAAGAAAACATGTCCAATATGCGGAAAAGTAGTGGTGAATATGAAAAGACATACAATGCAAATACACAGTAATCACCGAGCTTATAAATGCGATCAGTGCGACAAATCATTTATATGCAATTCATTACTAACAAAACATGTTGAAGAAAAACATTTAGGTGTCAAAAAAGAGCTGAAAGCATTATGTTTCATCTGTGGCAAAGCTTGTCCAAGTCAGGGTGATTTAAAGAAACATTTACCGACACACGACGATAACAGAGAGTACGACTGTAAtttatgtaacaaaaaatacaaatctcGTAACGGATTGCGGTGTCATTTAAAAGTGCACAAAGGTATAAGACCGTTTAGCTGTACGATTTGTTCGAAAAAATACTTTACAAATAAAGACTTACAGCAACATCTATACGTGCATACGGGCGAAAGACCGTTTGCGTGTCATATTTGTGGACGTACATTCAATTACAAAGCAGCCAGATGGACACATATGAAAGTCAAATTAAATGATGGACTTCCGCAATCTATCTGTTTTGATTGTTCTACACAAATACATCAGTATTCAGAATTTCGCAAACAATGTAAAAATGCAGATAAAGTTTTACATAAGATAGTTAACGGAAATGATAATTTTGATTCGCTCTCTGATGAAAATGATAATGTCGGTTcgtcaaatattaaaaatgaattttcaaatgaCGTAAAAGAGGAATCATTTGAGGCTGAAACTAATAGAACAAATGTGTCTTATTCCTATAATAATGATGAAAATACCCTAACAAATAACGTAATAGATACGATAAAAtctgtatttataaaaaatgaagtAGAAGAATCTGAAAATGGAAAGTTACTTAAAGTAGAAAGTTTAGAAGCTCATGTactagaggaaaataaaaattacgttaaagatgaaaattttcatagtaaatttaGTTCTTCTACGGATGATTCAGATAATTTCTTAGATTCAAAAGCAGACAGTGAAACAGAATTAACAGATTCTAACATAAGtaacaaaaagaataaaaaagttttaaagaaacttaaaaagAAACAAACGTGTGATCAATGTTTCAGAACGTTTCGAAAACCATGTGAACTGGCAAAGCATTTGAGTGATGTTCACAATAGAAAAAAGACTCTCGAATGCAGCGTATGTAGcaaaacatttcatttacaAGTTCAATTAGAtttacacttaaaattacattttaaaaccaaacatatttgtaatatttgtgGCAAAGAGTTTGCCGAAAGTTCGAAATTAAAACGACatcaaaaaatacacaaaacacGTGAACAGGTATTTTGCGTGCATTGCAATAAATCATTTCTTACCGATGATTCGTATCGACGACATGTGAAAGCATATCACACAGAATCGGGGGCAATCGTTAAAAAAATGTGTCCAATATGTGGTAAAGCTGTAATCGATGTCGATTTACACATAAATCAcacacataataaaaataaaccgTATAAATGTGATCAGTGTGGTAAATCGTTTGGTTTCAATCATTTACTTACGAACCATGTGGAAGAGAAACATTTAGGTATCAAACGGGAATTGAAAGCGCTATGTTTTATTTGCGGGAAAGCTTGTTTAAATCAAGGtgaattaaaaaaacatatGCCAATGCATGCGGAAAATCGTGAATTTGAATGCGAGCTatgtaagaaaaaatataaatctcgTAATGGATTGTTACGCCATTCAAAAAAACATAAGAACATACGGCCCTATGAATGTTCATtatgttcaaaaaaatatttggaaaaagcACATTTAGAACAACACTTTAATTCGCATACGGGGCAAAGACCATTTGCATGCCATATTTGCGGACGCACGTTTAGCTACAAGGGCGCCAAATGGAAACATATGAAAGTACATAATGTTGTTACTGAATCAAACAAAAATACGAACATTGTTGAGTCGAATAAAAACGCAAATGAAagtatacaataa
- Protein Sequence
- MPLKRADLDKICRMCLSFRKEMLTLHAPEVIEMIRNCTGIEVKLNDGLPQTICFECSEQMHQYSAFRQKCKNADKILHQLINEDDNDDNCDFLDANDRTISPNVTNELEDDIKEEPSDTENNRQSTLPVKTELVESETPESLKQENITDATDSGILEENKYYIKDENFDNKFTNDKDEFESYFTNTNTEMEEIKESSHLKEHRLKKKQKCDQCFRAFRKPCELAKHLNDVHKRKKTIECQVCSKTFHLQIQLDLHLKLHFKTKHICNVCGKEFGKSSKLLRHQKIHENREKIFCLHCDKIFISDDSYKTHVKLYHNTESGGKEKKTCPICGKVVVNMKRHTMQIHSNHRAYKCDQCDKSFICNSLLTKHVEEKHLGVKKELKALCFICGKACPSQGDLKKHLPTHDDNREYDCNLCNKKYKSRNGLRCHLKVHKGIRPFSCTICSKKYFTNKDLQQHLYVHTGERPFACHICGRTFNYKAARWTHMKVKLNDGLPQSICFDCSTQIHQYSEFRKQCKNADKVLHKIVNGNDNFDSLSDENDNVGSSNIKNEFSNDVKEESFEAETNRTNVSYSYNNDENTLTNNVIDTIKSVFIKNEVEESENGKLLKVESLEAHVLEENKNYVKDENFHSKFSSSTDDSDNFLDSKADSETELTDSNISNKKNKKVLKKLKKKQTCDQCFRTFRKPCELAKHLSDVHNRKKTLECSVCSKTFHLQVQLDLHLKLHFKTKHICNICGKEFAESSKLKRHQKIHKTREQVFCVHCNKSFLTDDSYRRHVKAYHTESGAIVKKMCPICGKAVIDVDLHINHTHNKNKPYKCDQCGKSFGFNHLLTNHVEEKHLGIKRELKALCFICGKACLNQGELKKHMPMHAENREFECELCKKKYKSRNGLLRHSKKHKNIRPYECSLCSKKYLEKAHLEQHFNSHTGQRPFACHICGRTFSYKGAKWKHMKVHNVVTESNKNTNIVESNKNANESIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -