Bneb013951.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000003.1:36576663-36583137[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0003 0.016 17.0 1.5 1 23 130 153 130 153 0.96 2 14 0.26 14 7.7 0.4 2 23 159 181 158 181 0.94 3 14 0.005 0.27 13.1 0.7 1 21 214 234 214 235 0.94 4 14 0.0035 0.19 13.6 0.7 1 23 242 264 242 264 0.95 5 14 0.026 1.4 10.9 0.6 1 23 379 401 379 401 0.97 6 14 0.023 1.2 11.1 5.9 1 23 407 429 407 429 0.97 7 14 0.0013 0.069 15.0 0.3 2 23 444 466 443 466 0.93 8 14 0.031 1.7 10.6 2.9 1 23 478 500 478 500 0.97 9 14 1.5e-05 0.00082 21.1 3.6 2 23 507 528 506 528 0.95 10 14 1.5e-05 0.00081 21.1 0.5 1 23 535 557 535 557 0.96 11 14 2.4e-05 0.0013 20.4 1.2 1 23 563 585 563 585 0.98 12 14 3.3e-06 0.00018 23.1 0.5 3 23 593 613 591 613 0.96 13 14 8.7e-05 0.0047 18.7 0.1 1 23 619 641 619 641 0.99 14 14 0.23 12 7.9 0.3 1 23 646 669 646 669 0.97
Sequence Information
- Coding Sequence
- ATGGATTATCCAGAATtaaatttggataaaatttgTCGAGCTTGTAAATGTGAACATActgaaatgtattcaatgttCGACAATGAAATACTATTGAATCaatcggaaaaaatttatgaaatgttTATGGCATGCACTTCATTGcagGTATCAGACAGTGATGGTATGCCAAAATTAATATGTAGTACATGTATTGAGCAACTAAATAATGCatacaatttcaaaaaacaatGCATGGATACTGATTCTTATTTACGGGAGTACatgcaaaaatgtattaaaattgaGGGACCAAATGTGGATGTGGAAAATAATTCCGAACTTATTTCGGATGTTGAGGAGAAAGTTAAGAAAGAATCTGACGATGATTCACTCTTAAACATAGTGTTTGATTGTAAATTTTGCGAGAagaaatttattgatttatctAGTTTGcaattacatgttaaaaaaaatcatcaaattagCGATACGAAATGTCGACTATGTTTAAcggaatttgaaaatttgattacATTGAAACAACATATCCAGGATGTACATGCAAATAAAATGTacgtttgtaaaatttgtaaaaaggaTAAACTTGCGTTCAGTCACCTTAAACGGCATTTGATgtctcatttaaaatataaaccgTACGCGTGTTCTGTGTGTGACCGACGTTTTCTAAGATCGGATCATTTGTCAGTCCATTTGAAAAAGTGTAAAGGTTTAAAAAGTTTCATATGCGATATCTGTAATAAAGGATTTGCGCGTGAAGACAGTTTACAATGCCACGTTCAATTGCACAGTATGAAAgagaatttaaaagttttagaTTCCGTTGAAAATTTCCTTGATCATTACATTGAACTGAATAACGGTAATGAGACGGACAGTAAGGATATGGAAATGTCCTCGTTATTTCATTCGCCAAAATCAGATTCGGAATTTTTCACTGACAATaatgatgatgactttgaatgTTCGATGGATAACACCATCGCACAACTCAAAGATATTGAACCTCTCGTGTGTAAAGATGAAattaaagttgaaaaatctgaaaatatttcCGAAGAAAATGCGAGTGAAATTTCAGTTAAGCGAAAACGAGGTCGACCAAGGAAAATTGAAGGAAAAGTAGATAAATATTCGTGTGTATATTGTGATAAAGTCTTAAAAACCAAATTAGGATATGATATCCACGTGAAAAAGCACGGGGacggtaatatttttaattgtactaaatgttttaaaaaatttaccgaaGAACATCATTTATCGATTCATTTAGAATCGCACAGTGACAATTTAGACGTGAAAGGCGAAGTGCAAGAGCCACAACAGTGTGATATTTGTAACGAACAATTCCCTAGCCTAGATCAATTAATTAAACATAAACTACAAACTCATAATGTTAAGATGAAAACTTCAAGTGACAAGAAATACACCTGTTATATTTGTAAGAAGAATTTCACAACGGAAAAGTACCGCGATATTCACGAAAAAACACATTCGACGGAGAAAATGTGCGCTTGTAAAACGTGCGGCAAACGTTTTTCCACCAAGGCGAATTTAAGTGAGCATATGAAATTTCATAATGAATGTTCGAAGAAATTTTTATGTTCCGAATGTGGTCAACGATTTATTCGCTACGATTATTTGGTTATACATATGCGCAGACATCGtggcgaaaaaccatttaaatgtcgCTATTGTGGCAAAgGATTTCCACGCACAACTGACTTAACAGTTCATGAACGGTACCATACGGGGGAAAAAACTCATCTATGTGTCATCTGTGGTCGTGGTTTTGGAAGagcaTACAATTTAACAGTGCACATGCGCACACATactggtgaaaaaccgtatgaGTGTACTTATTGTGACGCTGCGTTTGCGCAAGGTAATGATTTAAAAGCGCATGTGCGCCGACACACCGGTGAACGTTACTATTGTGATATATGTTCTGAACCATTTTTAATGGGCTACCTCCTAACACAACACAAAAGAACTGTACATGGGTTGGACGTAAAATCTCATATTAGACGTTTAAAACCGTCAGAACGTGTGAACGTATCAAATTCTACCAAAGAGCCAATAACAGTAGTGCCTTGCGATAATCAGACCAGTGACAACTCAGCACAGTTGCAACTTGGTGAAGTGTTACAAGATACAGCAGTTTTAGATAtcacaaataatttaaatgataatgTAGGAATAATGAGTGGTGATTTAACAAATCAAATTAAATCTGAAGTGATAGCAGATAATTTAGTGAATCAAATTGAACCAGAATTTTCATCTCAAATTGCTGATGCTGTgacgtaa
- Protein Sequence
- MDYPELNLDKICRACKCEHTEMYSMFDNEILLNQSEKIYEMFMACTSLQVSDSDGMPKLICSTCIEQLNNAYNFKKQCMDTDSYLREYMQKCIKIEGPNVDVENNSELISDVEEKVKKESDDDSLLNIVFDCKFCEKKFIDLSSLQLHVKKNHQISDTKCRLCLTEFENLITLKQHIQDVHANKMYVCKICKKDKLAFSHLKRHLMSHLKYKPYACSVCDRRFLRSDHLSVHLKKCKGLKSFICDICNKGFAREDSLQCHVQLHSMKENLKVLDSVENFLDHYIELNNGNETDSKDMEMSSLFHSPKSDSEFFTDNNDDDFECSMDNTIAQLKDIEPLVCKDEIKVEKSENISEENASEISVKRKRGRPRKIEGKVDKYSCVYCDKVLKTKLGYDIHVKKHGDGNIFNCTKCFKKFTEEHHLSIHLESHSDNLDVKGEVQEPQQCDICNEQFPSLDQLIKHKLQTHNVKMKTSSDKKYTCYICKKNFTTEKYRDIHEKTHSTEKMCACKTCGKRFSTKANLSEHMKFHNECSKKFLCSECGQRFIRYDYLVIHMRRHRGEKPFKCRYCGKGFPRTTDLTVHERYHTGEKTHLCVICGRGFGRAYNLTVHMRTHTGEKPYECTYCDAAFAQGNDLKAHVRRHTGERYYCDICSEPFLMGYLLTQHKRTVHGLDVKSHIRRLKPSERVNVSNSTKEPITVVPCDNQTSDNSAQLQLGEVLQDTAVLDITNNLNDNVGIMSGDLTNQIKSEVIADNLVNQIEPEFSSQIADAVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -