Bneb025592.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000008.1:17180089-17181273[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00055 0.03 16.1 1.0 1 23 79 101 79 101 0.97 2 11 0.00066 0.036 15.9 0.8 2 23 108 129 108 129 0.97 3 11 0.00049 0.027 16.3 3.2 1 23 135 157 135 157 0.96 4 11 0.0094 0.51 12.3 1.8 1 23 163 185 163 185 0.96 5 11 0.0005 0.027 16.3 1.4 1 23 191 213 191 213 0.96 6 11 3.6e-05 0.002 19.9 1.1 1 23 219 241 219 241 0.97 7 11 3.6e-05 0.002 19.9 6.9 1 23 247 269 247 269 0.99 8 11 7.1e-05 0.0038 19.0 3.9 1 23 275 297 275 297 0.98 9 11 2.7e-05 0.0015 20.3 3.2 1 23 303 325 303 325 0.98 10 11 3.5e-05 0.0019 19.9 1.9 1 23 331 353 331 353 0.98 11 11 3.1e-06 0.00017 23.2 0.5 1 23 359 381 359 381 0.98
Sequence Information
- Coding Sequence
- atggaaaataaagaaTCTACATCAACTGCTGATACATGCACTGTTGTAATAAAAGATGAGGAAAATTCACAGGATTTGGATAATCCATTtccaaattataaaacaaaccAACAGGAATCATCTGATTCCGCATGTCTAAATGAAACACAACCGAAATCGGAAAAAGACAGTACTAGCGATGtcaatttaactgaaaataaaaatgaagaaaatcgTGAAGATCGCGAAGGCGtgttcaaatgtgatatatgtccAAGAATATTTACGCGATcatacattttcaaattacatcaacaatGGCACGTTGGTAAACAGCCTGCAAAATGCAAAACGTGTTCAAAAGAATTCCCAACAGCAAGCCGATTGAAGGCGCACGAAGTCACACACTCTGCCATAAAACCGTACATGTGTCACACATGTTCGAAAACGTTCGCCAATCTACGCAACTTCAAAGAGCATGAAACCGTACATACTGGCGCAagaccattcaaatgtaatacATGCTTTAAATCATTCTCACGAATCGGCATCTTAAGATACCACGAAAAAATACATAACAGCGAATATTCGTTCGAATGTAGCACATGCTTTAAAACGTACGCTACCGCGCGTGCTctaaaaaaacatacaacatTACACACCAGTAAAAAATCCTTCATATGTAAAACATGTTCGAAAGGATTCATTCAGAAATTTGCGCTACAAAAACATGAACGAATACACACCGGCGAAAAATCATACACATGTAACGAATGTTTTAAAGCGTTCGCGCATGCGCATCATTTGAAGGATCATCAAAAAACGcataccggtgaaaaaccattcgAATGTAAGACGTGTTTGAAAAAATTCTCACGAACCACCACGTTGAAAACGCATCAACGCATACACACCGGCGAGAAACCGTTCCGTTGCCAGacatgttttaaaacgtttACGCAATCGAACAATTTGAAAGAGCATGAAAAAATCCATTCGGACGATAGACCGTTcgaatgtgatacatgttttaaatcGTTTACCAGACTCGATAAATTGCGAATACACGAACGCAATCATACGCGAGAAAAACCGTTCGAgtgtgatgtatgttttaaaacgttCGCCACAGCGAGCAGTTTACGGAAAcatgaaaatatacatacgggACAGAAATCGCAAGTGAAGAAAACTATTCCACTgtaa
- Protein Sequence
- MENKESTSTADTCTVVIKDEENSQDLDNPFPNYKTNQQESSDSACLNETQPKSEKDSTSDVNLTENKNEENREDREGVFKCDICPRIFTRSYIFKLHQQWHVGKQPAKCKTCSKEFPTASRLKAHEVTHSAIKPYMCHTCSKTFANLRNFKEHETVHTGARPFKCNTCFKSFSRIGILRYHEKIHNSEYSFECSTCFKTYATARALKKHTTLHTSKKSFICKTCSKGFIQKFALQKHERIHTGEKSYTCNECFKAFAHAHHLKDHQKTHTGEKPFECKTCLKKFSRTTTLKTHQRIHTGEKPFRCQTCFKTFTQSNNLKEHEKIHSDDRPFECDTCFKSFTRLDKLRIHERNHTREKPFECDVCFKTFATASSLRKHENIHTGQKSQVKKTIPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -