Bneb019448.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000005.1:54266991-54268485[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 9.9 5.4e+02 2.8 1.1 11 23 158 170 158 170 0.93 2 11 0.48 26 6.9 1.7 2 23 177 197 176 197 0.96 3 11 1.1e-06 5.8e-05 24.7 4.6 1 23 203 225 203 225 0.99 4 11 5.1e-06 0.00028 22.6 0.0 1 23 231 253 231 253 0.99 5 11 0.00029 0.016 17.0 5.9 1 23 259 281 259 281 0.99 6 11 0.00023 0.012 17.4 3.7 1 23 310 332 310 332 0.97 7 11 8.8e-05 0.0048 18.7 0.1 1 23 337 359 337 359 0.91 8 11 9.1e-05 0.005 18.6 2.2 1 23 365 387 365 387 0.94 9 11 0.0001 0.0055 18.5 9.8 1 23 393 415 393 415 0.97 10 11 1.8e-06 9.8e-05 24.0 0.5 1 23 421 443 421 443 0.97 11 11 1e-05 0.00055 21.6 2.4 1 23 449 471 449 471 0.96
Sequence Information
- Coding Sequence
- atgactgatattaaaaaaagattgaaTTTTGATGAAGTTTGTCGAACTTGTTTGGCTGATGGTGATTTAAAGTCAATATTCCTTCCAGAAGATGATTCAATGCAACTTGCAAATATGATAATGGCGTGCGCCTCAGTTCAAATTGCAAAAAACGATGGCTTCCCttcaaatatttgtaataattgtaTTGTTCAAGTTAATCAAGCCTATGCTTTTAAACAACGTTGTGAAGAAGTACATTCTTTGTTACATTTAGAACTCTTTGAAAGTGATATTAAGTTAAAAGATGAAGATTATTATGTAGGAAATGGTGTTAAATCTGAGTTAAGTCCAGATGTGAATATAAAGAACGAAGATTCTACGGTAAATACAATTTCCGAGTCGAATAAATATGGTAGTAGTAGCTGTGGGGGTTCTTGGAAAGAATCATCCTCAGAGGAGTATGATCATGAGGATCAACTAACggataataaaacaaaaagtgaATATCGAAAACATAGAAAAAACCATTCACGTACGAAATTAATCTCATGTCAAACATgcgagaaaaaaataaatccgAAAAATGTACATTTGCACATGCGCAGTCATACAAAAGAAAAACCGTACACGtgcaaattttgtaacaaaGGTTTCAGTTTCAATCAAAATTTGAAACGCCATATGAAAACGCACACAGGTGAACGGCCGTATCGTTGTGACGTGTGCGATAAAGGCTTCATTCAAGCGGTCACATTAGCGGCACATCTTCGAGTCCACACCGGTGAACGCCCGTTTCAATGCTCTTACTGTGGCAAAGCGTTCAAACAAGCGAAACATTGCAGTTTACACATGCAAACGCATTTAAACTCGTCGGGACCGACCAGAAGACAAGGTCGACCCACCGGACTTGCGTACAAAAAACGCACCGATAATATCGATTTACCATTCACCTGCGAAATATGCAATCGAAGATGTGCCTCGAAAACGTTACTGAAAAAACATCAACTTCAACATGGCGAGAAAACGTTCTTGTGCAGCGATTGCGGCAAAGCGTTCGTCACTAAGGCGGGTCTCAATCAACACAGCGTTGTCCATTCAGGACAAAAACCCTTTCACTGCGACATATGTAATAAATCCTTCGCGTACagttcatatttaaaaattcataatctTCTACATACCGGCGAAAAACCTCATCATTGTCATGTTTGcgggaaaaatttttcacagagTACACATTTAAAAACGCATTTACGGCTACACGATGGCTCAAAACCGCACAGCTGTTCCGTATGCGGTAAAGATTTCGCGCTTAAAGGTAATCTAACAGTTCATATGAGAATACATACGGGGGAGACACCGCACGTTTGTCCAATATGTGGAAAAGGTTTCTATGATTCGAGTAGTATGCGTAAACATCATAAGGCGCATGGTAAAAAAGAATTTCAGTAA
- Protein Sequence
- MTDIKKRLNFDEVCRTCLADGDLKSIFLPEDDSMQLANMIMACASVQIAKNDGFPSNICNNCIVQVNQAYAFKQRCEEVHSLLHLELFESDIKLKDEDYYVGNGVKSELSPDVNIKNEDSTVNTISESNKYGSSSCGGSWKESSSEEYDHEDQLTDNKTKSEYRKHRKNHSRTKLISCQTCEKKINPKNVHLHMRSHTKEKPYTCKFCNKGFSFNQNLKRHMKTHTGERPYRCDVCDKGFIQAVTLAAHLRVHTGERPFQCSYCGKAFKQAKHCSLHMQTHLNSSGPTRRQGRPTGLAYKKRTDNIDLPFTCEICNRRCASKTLLKKHQLQHGEKTFLCSDCGKAFVTKAGLNQHSVVHSGQKPFHCDICNKSFAYSSYLKIHNLLHTGEKPHHCHVCGKNFSQSTHLKTHLRLHDGSKPHSCSVCGKDFALKGNLTVHMRIHTGETPHVCPICGKGFYDSSSMRKHHKAHGKKEFQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -