Basic Information

Insect: Brachynemurus nebulosus
Gene Symbol: -
Assembly: GCA_035578155.1
Location: JAPWDM010000002.1:15227586-15231032[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00064 0.035 15.9 0.2 2 23 189 210 188 210 0.97

2 12 7.5e-05 0.0041 18.9 6.1 1 23 218 240 218 240 0.97

3 12 1.8e-05 0.00098 20.8 0.9 1 23 246 268 246 268 0.99

4 12 0.0039 0.21 13.5 0.3 2 23 274 295 273 295 0.96

5 12 5.4e-05 0.003 19.3 3.6 1 23 300 322 300 322 0.98

6 12 0.00069 0.038 15.8 4.9 1 23 328 351 328 351 0.97

7 12 0.12 6.3 8.8 0.3 2 23 359 377 358 377 0.79

8 12 0.011 0.62 12.0 5.5 1 23 383 406 383 406 0.93

9 12 0.001 0.056 15.3 0.4 1 23 415 438 415 438 0.93

10 12 0.0064 0.35 12.8 0.8 1 23 444 467 444 467 0.90

11 12 4.6e-06 0.00025 22.7 3.7 1 23 473 495 473 495 0.99

12 12 1.3e-06 7.1e-05 24.4 0.6 1 23 501 523 501 523 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00064	0.035	15.9	0.2	2	23	189	210	188	210	0.97
2	12	7.5e-05	0.0041	18.9	6.1	1	23	218	240	218	240	0.97
3	12	1.8e-05	0.00098	20.8	0.9	1	23	246	268	246	268	0.99
4	12	0.0039	0.21	13.5	0.3	2	23	274	295	273	295	0.96
5	12	5.4e-05	0.003	19.3	3.6	1	23	300	322	300	322	0.98
6	12	0.00069	0.038	15.8	4.9	1	23	328	351	328	351	0.97
7	12	0.12	6.3	8.8	0.3	2	23	359	377	358	377	0.79
8	12	0.011	0.62	12.0	5.5	1	23	383	406	383	406	0.93
9	12	0.001	0.056	15.3	0.4	1	23	415	438	415	438	0.93
10	12	0.0064	0.35	12.8	0.8	1	23	444	467	444	467	0.90
11	12	4.6e-06	0.00025	22.7	3.7	1	23	473	495	473	495	0.99
12	12	1.3e-06	7.1e-05	24.4	0.6	1	23	501	523	501	523	0.98

Sequence Information

Coding Sequence: ATGATGTCTTTATGGAATGTCTCTGGAATTGTTGATATGATTCAGGCGTGCACTTCAATAcagATACGAAAGTGTGATAATTTACCGTCACAAATATGTCGGATTTGCATCGATAAAATTACAGAAGTGTATGCTTTCAAATTGCAGTGTGAAAGTTTTGATCGTTTATTACATCGAATATTAAATGACGATGATAAAAATTGGTTTAAACAAGAAGGAAATATTGATACAAAAGAAGTTGTCTATATTAAAAACGATATTCAAGATTTAGATGATAACGATACattaacaaatattaattttcagttAGATGATTCAGTTGCATCTGATTTCGATAGAAAAAACCATGAAAATGATACTGAACAAGATATGGAACCTATAGCGCCAGTAGCATCAGAGCCACAACTTCAAATTAAGGATGATTGCGATCAAGATATCACACTTAAtgtttcaaatatatatttagACAGTGAAAATGAGATAGTAcgactaaaagaaaaaaaacgtttGCGCTTAGAACGTGCTAAACATCTTGACTCAGAGAAGTGTGATCGTGAGAcattaacttgtaaaatttgtaacaaaGTTTTAGTTAACATATACTCGTTAGGACGACATATGGAACGGCATGATGAGAAACGACAATTCCATCATTATTGTAGCGTTTGTAAAAAAGGGTTTTATGAAAAAGGACATCTAACGAAACATATGAGACGGCATAAAGGTGAAACTAGgtaTAGTTGCGAAAAAtgcagtaaaaaattttacgaattaaGCGCTCTAGCTGTTCATATGCGAAAACATCGTACAGAACCGATTCCATGTAGAATGTGTGACAAAAAATTTATGGTCAAATTACAATTAGATATTCATATGAAAATACATAATCCAGAAGTTCATACTTGTGATAAATGCGGCAAAACGTTTGATTTTATATCATCATTAAAAAGTCATCAAACCACTCATCTAGAAGAGAACATCTATCCATGCTTGTTATGTGACAAAAGTTTTAAATATGTAGAAGCCTTAAAACGTCATCATAAACGATGTCATCTGGGCGAACGTAGTATGACGGTATGTAACATATGTGGTAAAAATGTTGTCGAATTGCGAACACATATGTTAACGCATAGTTCAGAAAGACCGTTTGCTTGCACTCACTGTCCAAAATCGTATGCATCAAGAACACTTTTAAATCAACATTGTCGTAAAAAACATGATGAGAATCCCGTCAAGCGACCATACTTATGTAGTATTTGTGGCAAAGGAAGTATAACGTCAACAGCACTACAAAATCATATCTTACATATGCATACATCGGGCAGATTGTTCCCATGCCCCATTTGcaataagaaatttaaaactgataaaattgTTAAAGTACATATTCGATTTACTCATAATAATGAAAGACCCTACACATGTTCAGTATGTTCGAAAAGTTTTCAAACACGAAGCACATTAAAAACACATACGCGGACTCATACTGGTGAAAGACCTTTTACGTGTAAACCATGTGGAAAGGCATTCAGTCAAGCCAGTACATTACGTACACATATGAAAGTTCATGGCTTTGAAACTATCAAAGTCAATAAAATATCTGATAATGACACTCATATGATAAATAAGGAATAA
Protein Sequence: MMSLWNVSGIVDMIQACTSIQIRKCDNLPSQICRICIDKITEVYAFKLQCESFDRLLHRILNDDDKNWFKQEGNIDTKEVVYIKNDIQDLDDNDTLTNINFQLDDSVASDFDRKNHENDTEQDMEPIAPVASEPQLQIKDDCDQDITLNVSNIYLDSENEIVRLKEKKRLRLERAKHLDSEKCDRETLTCKICNKVLVNIYSLGRHMERHDEKRQFHHYCSVCKKGFYEKGHLTKHMRRHKGETRYSCEKCSKKFYELSALAVHMRKHRTEPIPCRMCDKKFMVKLQLDIHMKIHNPEVHTCDKCGKTFDFISSLKSHQTTHLEENIYPCLLCDKSFKYVEALKRHHKRCHLGERSMTVCNICGKNVVELRTHMLTHSSERPFACTHCPKSYASRTLLNQHCRKKHDENPVKRPYLCSICGKGSITSTALQNHILHMHTSGRLFPCPICNKKFKTDKIVKVHIRFTHNNERPYTCSVCSKSFQTRSTLKTHTRTHTGERPFTCKPCGKAFSQASTLRTHMKVHGFETIKVNKISDNDTHMINKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -