Basic Information

Insect: Brachynemurus nebulosus
Gene Symbol: -
Assembly: GCA_035578155.1
Location: JAPWDM010000007.1:25151734-25165665[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 3.4 1.8e+02 4.2 5.3 2 23 195 217 194 217 0.90

2 14 0.0015 0.082 14.8 4.9 1 23 258 280 258 280 0.99

3 14 3.2e-05 0.0017 20.0 1.7 1 23 286 308 286 308 0.98

4 14 0.0032 0.17 13.8 0.5 1 23 333 356 333 356 0.94

5 14 0.059 3.2 9.8 0.3 1 23 363 386 363 386 0.95

6 14 0.011 0.58 12.1 0.3 1 23 389 411 389 411 0.97

7 14 0.00024 0.013 17.3 1.6 1 23 417 439 417 439 0.98

8 14 8.7e-06 0.00047 21.8 1.8 2 23 445 466 444 466 0.97

9 14 0.031 1.7 10.6 0.6 2 23 472 494 471 494 0.90

10 14 1.8e-05 0.00098 20.8 0.9 1 23 504 526 504 526 0.97

11 14 3.6e-06 0.0002 23.0 1.2 1 23 532 554 532 554 0.98

12 14 7.5e-06 0.00041 22.0 2.3 1 23 560 582 560 582 0.99

13 14 4.1e-05 0.0022 19.7 5.2 1 23 588 610 588 610 0.98

14 14 0.0026 0.14 14.0 2.0 1 23 616 639 616 639 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	3.4	1.8e+02	4.2	5.3	2	23	195	217	194	217	0.90
2	14	0.0015	0.082	14.8	4.9	1	23	258	280	258	280	0.99
3	14	3.2e-05	0.0017	20.0	1.7	1	23	286	308	286	308	0.98
4	14	0.0032	0.17	13.8	0.5	1	23	333	356	333	356	0.94
5	14	0.059	3.2	9.8	0.3	1	23	363	386	363	386	0.95
6	14	0.011	0.58	12.1	0.3	1	23	389	411	389	411	0.97
7	14	0.00024	0.013	17.3	1.6	1	23	417	439	417	439	0.98
8	14	8.7e-06	0.00047	21.8	1.8	2	23	445	466	444	466	0.97
9	14	0.031	1.7	10.6	0.6	2	23	472	494	471	494	0.90
10	14	1.8e-05	0.00098	20.8	0.9	1	23	504	526	504	526	0.97
11	14	3.6e-06	0.0002	23.0	1.2	1	23	532	554	532	554	0.98
12	14	7.5e-06	0.00041	22.0	2.3	1	23	560	582	560	582	0.99
13	14	4.1e-05	0.0022	19.7	5.2	1	23	588	610	588	610	0.98
14	14	0.0026	0.14	14.0	2.0	1	23	616	639	616	639	0.96

Sequence Information

Coding Sequence: atgtcatatatcaATTCATTTTGTCGTTTGTGCGCCGAACGTTATCCAAAAACCCGTTTAATCACCGGCTCCAgtcaaataaagaaaaaacgaTTGGACGATTACATTTTCcgttatttatgtataaaaattgaCGATAATTGCGAGTATCCGAAAAGTATTTGTTTCGATTGTGTCGATGTGATTGTTAATTTTCATACGTTCGTGAAAAAAGTACAGTTTGCGCAaacgaaattgttaaatattgtgAGTAATTCGACGACCACGCCACCACAAACGTTAAATAATGCCCCGTCAATTAAATTAGAACCAATTGATTATTTGGATGAAAAAgtgacattgaaaaattttgaaaatgaattgagaAAACAGACGTCGTTCGATGATGAACAAGACGCGCCATCTAGTGAAATATTACATGAAAATTCGACGGTTGCATGGTCGCTGGACGAGAATGATGTTAGTAATAATTCGGTGGAATTTAAACAAGAGAATGATTTCACGGCATCGGACAACGAAGCGGacgatgaaaaattaaaaaaatacgaaCGTTCAAAAGGTTTCAAAAAATACGAAATATGGAAATGTTATCATTGCAATAAGTGTCACGTAAATCTCGAAGCATTACAgaaacattttgaatatgtgCATAACGCCCCAGTCGAGTACAACTGTTACAAATGTCAAGGACTGTTTAACGATCTCAACGAGTACAAGTGCCATCTGTCGAACGATCACGGAATAAATCTAACCACCGACAATGTGGcgaaatttaaatgtaatatatgcGGTTTCGGAACGAATCATGTATCAAATTTTCGACATCATCAATTGACACATTCAGgAATCAAAAAATTCCGATGTGACGTATGCGGCAAAAAATTCACGCTAAAACAACAGTTACAGTCGCATTCGCTCACGCACAAACGTGTGTTTACCGTGTCGGAAATAAAAGTGGAACGGCCGGATATCGATGGGCCACAATTCGCCGACGtattcaaatgttttaaatgtGATTCGTCGTTCAACAAGTTGGACGAGCTGGCCACGCATATTGACGAGTTGCACGACGATGTTTTGGCGAAATATTTGTGTCCGCGATGTAATCGGGATGCGGTCAGTAAACGTGAATTGAGCGAACACTTGAAAAAGGATCATAAACGGTACCAGTGTCGAATTTGTGGTAAAGAGATCGCAACCAGAACGGCGTTCGTGTCACATTATTATATACATGAGGGCATCAAACGATTTTCATGCGATGTTTGCGGGAAAAGTTTCTCATTGAAACAGCATGCCGAAGTACATCGGATGCGACATGAAAAACCAACAATCACTTGTGATCAGTGCAATAAAACattttcatccgaatttttattacaaaggCATCAAAAATCGCATGTGATGAAACCGCAGGAATGTGATATATGCCAGAAGAAATTTTCATCGAAAAAGGTTGTTGATGCGCACAAAAAACTCATACATGAACGTATCGAAAGGGAAGGTTCTTTGTTCGTTTGCGACCAGtgtggtaaaaattttaaacagaaagGTCAATTTATGCAACATGTAACGATACATAGTAACGTTTACGATTTTCGGTGTGATAAATGTCCAAAAGCttttaaaaatgtgtacaatttaaaaaaacatgaacagGTACACGTAATGATAAAAGCGTTCAAATGTGATCAGTGCGGCGCCGCATTTAAACATCGACGCACGTTGACGCGCCATGTTCGAATTCACACCGACAAATTGCCATACGAATgtgaattttgtaaaaaatgttttcgtgAAAAGTCCTATTTACGGgtTCATTTACGGCAACATACGGGTGAAAGGCCATACGCTTGTCTCGAGTGCAATCATTATTTTTCGAATGATTCCAATTACATAAAACACTTAAGAGGACGACATGGACTAGAGAATGTGTCCATAGCAAATAATCCTCAATAtccatttgttaataaataa
Protein Sequence: MSYINSFCRLCAERYPKTRLITGSSQIKKKRLDDYIFRYLCIKIDDNCEYPKSICFDCVDVIVNFHTFVKKVQFAQTKLLNIVSNSTTTPPQTLNNAPSIKLEPIDYLDEKVTLKNFENELRKQTSFDDEQDAPSSEILHENSTVAWSLDENDVSNNSVEFKQENDFTASDNEADDEKLKKYERSKGFKKYEIWKCYHCNKCHVNLEALQKHFEYVHNAPVEYNCYKCQGLFNDLNEYKCHLSNDHGINLTTDNVAKFKCNICGFGTNHVSNFRHHQLTHSGIKKFRCDVCGKKFTLKQQLQSHSLTHKRVFTVSEIKVERPDIDGPQFADVFKCFKCDSSFNKLDELATHIDELHDDVLAKYLCPRCNRDAVSKRELSEHLKKDHKRYQCRICGKEIATRTAFVSHYYIHEGIKRFSCDVCGKSFSLKQHAEVHRMRHEKPTITCDQCNKTFSSEFLLQRHQKSHVMKPQECDICQKKFSSKKVVDAHKKLIHERIEREGSLFVCDQCGKNFKQKGQFMQHVTIHSNVYDFRCDKCPKAFKNVYNLKKHEQVHVMIKAFKCDQCGAAFKHRRTLTRHVRIHTDKLPYECEFCKKCFREKSYLRVHLRQHTGERPYACLECNHYFSNDSNYIKHLRGRHGLENVSIANNPQYPFVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -