Bneb019718.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Brachynemurus nebulosus
Gene Symbol
COX15
Assembly
GCA_035578155.1
Location
JAPWDM010000006.1:3409263-3428498[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.0032 0.17 13.8 0.8 2 23 157 178 156 178 0.97
2 12 8.3e-05 0.0045 18.7 1.4 2 23 187 208 186 208 0.97
3 12 5.2e-05 0.0028 19.4 0.7 1 23 214 237 214 237 0.98
4 12 8.4e-05 0.0046 18.7 0.3 2 23 243 264 242 264 0.97
5 12 0.00045 0.024 16.4 2.4 1 23 270 292 270 292 0.98
6 12 3.1e-05 0.0017 20.1 4.9 1 23 298 321 298 321 0.96
7 12 2.3 1.3e+02 4.7 0.6 2 23 329 347 329 347 0.74
8 12 3.8e-05 0.0021 19.8 4.1 2 23 353 375 352 375 0.97
9 12 0.018 0.99 11.4 1.1 1 23 386 409 386 409 0.93
10 12 0.00043 0.024 16.5 2.7 1 23 415 438 415 438 0.97
11 12 2.4e-06 0.00013 23.6 2.1 1 23 444 466 444 466 0.98
12 12 3e-06 0.00016 23.3 0.7 1 23 472 494 472 494 0.98

Sequence Information

Coding Sequence
ATGACATCTGTATTTGATACAGAGGTCCTAAATATGTTAACAGTGTGTACAACAATTACGaTATCTTTGCAAGATGGGCTTCCAGCTCAAATATGCACTGCCTGTTGTACGAAAACGTATGAATTCTTTGCCTTTAAACAACAGTGTGAAAACTCAGATCAGTTActgagaaaaatattaaatgatgaGGTTGGGAAATACGTTTTATCGAATGATCATGCAAAAGGAGATTTAGAAAATAAGGATGAAATGAAAGAGGAGTCTGAAGACACAAAATTTTCTACTAGTGACAATGATATTCGGAATAATGATGATAGTAGCgatgaagaaaatgaaaaagaCAGTATCCACGATCAATCGGActataaattcgattttaatGATACCAGTAAAGAAACAGGTAGTAGAGATTCGGCAAGAGAAAAGGCATTATCCTGGGGTTTAGATAAATGTGATCCGGACACGTCTACctgtaaaatttgttataaagtCCTAGTGAACATACATTCACTCGTTCGCCATATGGAAATGCAcaataaaaatcgaaaatttcacgttgtctgtaaaatttgtaacaaaGGCTTCTACGAAACCGGACATTTAACAAAACATATGTTACGTCATAAAGGTGAAGCACgttataaatgtgaaaaatgccCGAAAACGTTCTATGAACTGAGCGCGCTTGGTGTACATATGAAACGGCGTCATAAAGTAAAACCGGTCACTTGTAATGAATGTGGTAAATCGTTTATGGTACAATTGCAACTTGATATTCACATGAAAACTCACGGCGaccaaaataaatttacttgttCCGATTGTGGAAAAACGTTTCATCAAGCGAATATTTTACGGAAGCATCAAGTAACGCATATGAAAGAAAGGCTGTTCCATTGCACGAAATGCGATAAATCGTTTAAAGATAAATACGCGTTAAATACACATTTAAAGTATTCACATTCGGGTGAGAAGAAGCGGGAAGTGTGCAATGTTTGCGGAAAGTCTGTCATACATTTACAGtCTCATTTATATGTCCATAGCGAGGAAAGAGTAAAATGTCCCGAGTGTTCGAAAGAATTCACTTCCAAATACTGTTTAAATAGTCATATGAAGAAAAAACACGGCAATCCCGATGAACCTCGTCGAAAACCGTACTTATGTAGCATGTGTGGCTACACGAGTGAAAGTAAGGCTGCATTACAAATCCACTATCAACATAAACATACAACGGAGCGTGCGCACAAATGTCCAATATGCgagaaaagttttaaaacaagTAAAGTTGTTACATACCACATACGATATACACATAACAATGAACGACGATTTAATTGTACCATGTGTCCAAAAAGTTTTCAAACGAGCacaacattaaaaattcatatgcGCACGCACACAGGTGAACGCCCATTTGAATGTAAGCTGTGTGGTAAATCATTTGGTCAAGGGAGTACGTTAAAAACGCATATGAAAGTACACGGCTTCAAAGTTGAGAAAAGTAACAAAACTGATGAAATCgtagaacataataatattgtGCCATTAGAAAAgtttattcCTAATATACTCAGAAGAAATACAGGAGTCACATTAAATGTTGTGGCACAGGCTTCATCGAAATCAGGAAAACCAGTTGGATATTGGTTAGCGATATGTGGTGGTATGGTGTTTGGAGCTGTTGTTTTagGTGGTGTTACTCGTCTTACAAAATCTGGATTATCGATGGTTACGTGGGAGTTATTGGGTGAAAAGTTGCCGCGTAATGAGAAAGAATGGCTAGAAGAATTTGAACGATATAAGCAGTATCCcgaatataaaatAATGAACCGTGAAATCACGTTGGCTGAATTCAAATGGATATGGTATATGGAATTTGTCCACCGTAGTTGGGGCAGAATTCTCGGTGCCGTTTTTTTCATTCCAGCCACTGTATTTTGGTTACGTGGTATGTTTTCGCGACAAATGAAATTGAAAGTTCTTGGTTTCGGTACTCTAATCGGTTTACAGgGTTTAATGGGTTGGTATATGGTGAAATCTGGACTAGAAGACCGGTTTCATGACCCAAATGATGTTCCTCGAGTTTCTCAGTATAGATTAGCCGCCCATCTTACCATGGCTTTTATTCTTTATTCACTTTTTGTAACAAGTGCTCTTAATGAATTGTTACCAGCACAAGCGGGAAAATACGCCGCGGGCAAACTTAGAACTTTAGCACACGTTACTAAAGGTTTCGTGTTTTTGACAGCAATATCAGGAGCTTTCGTGGCGGGTATTGAAGCTGGTTTAGTGTATAATTCGTTTCCAAAAATGGCCGACAAATGGATACCAGATGATATATTAAGTTATACGCCGACATTGAGAAATTTCACCGAAAATCCTACAACAACGCAGTTTGACCACAGGATTTTAGGGATCACAACGTTGACATTGGCGTCAACAGTTTGGTTACTGTCACGTCGATATAAATTACCAGCACGCGCGCACGCAGCCGCAAATGCACTAGGTTTAATGGCATGGTTTCAAGTAACTTTAGGAATATCAACGTTACTTTCATATGTACCTGTATGGTTGGCCGCATGTCATCAGAGTGGTTCGCTAATATTACTAACCACAGCATTATGGTTTTCACATGAATTGAAAAGAATACCGAAATAA
Protein Sequence
MTSVFDTEVLNMLTVCTTITISLQDGLPAQICTACCTKTYEFFAFKQQCENSDQLLRKILNDEVGKYVLSNDHAKGDLENKDEMKEESEDTKFSTSDNDIRNNDDSSDEENEKDSIHDQSDYKFDFNDTSKETGSRDSAREKALSWGLDKCDPDTSTCKICYKVLVNIHSLVRHMEMHNKNRKFHVVCKICNKGFYETGHLTKHMLRHKGEARYKCEKCPKTFYELSALGVHMKRRHKVKPVTCNECGKSFMVQLQLDIHMKTHGDQNKFTCSDCGKTFHQANILRKHQVTHMKERLFHCTKCDKSFKDKYALNTHLKYSHSGEKKREVCNVCGKSVIHLQSHLYVHSEERVKCPECSKEFTSKYCLNSHMKKKHGNPDEPRRKPYLCSMCGYTSESKAALQIHYQHKHTTERAHKCPICEKSFKTSKVVTYHIRYTHNNERRFNCTMCPKSFQTSTTLKIHMRTHTGERPFECKLCGKSFGQGSTLKTHMKVHGFKVEKSNKTDEIVEHNNIVPLEKFIPNILRRNTGVTLNVVAQASSKSGKPVGYWLAICGGMVFGAVVLGGVTRLTKSGLSMVTWELLGEKLPRNEKEWLEEFERYKQYPEYKIMNREITLAEFKWIWYMEFVHRSWGRILGAVFFIPATVFWLRGMFSRQMKLKVLGFGTLIGLQGLMGWYMVKSGLEDRFHDPNDVPRVSQYRLAAHLTMAFILYSLFVTSALNELLPAQAGKYAAGKLRTLAHVTKGFVFLTAISGAFVAGIEAGLVYNSFPKMADKWIPDDILSYTPTLRNFTENPTTTQFDHRILGITTLTLASTVWLLSRRYKLPARAHAAANALGLMAWFQVTLGISTLLSYVPVWLAACHQSGSLILLTTALWFSHELKRIPK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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