Bneb013222.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000003.1:13710326-13712071[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.57 31 6.7 1.7 2 21 84 103 83 104 0.92 2 14 0.00027 0.015 17.1 0.4 3 20 164 181 162 183 0.92 3 14 4.3e-05 0.0023 19.6 0.4 1 23 189 212 189 212 0.97 4 14 0.00087 0.047 15.5 0.3 2 23 221 242 220 242 0.95 5 14 0.39 21 7.2 3.7 3 19 262 278 260 282 0.89 6 14 0.0011 0.06 15.2 0.5 1 23 288 310 288 310 0.98 7 14 6e-05 0.0033 19.2 0.5 1 23 347 369 347 369 0.98 8 14 0.0042 0.23 13.4 1.1 1 23 374 396 374 396 0.98 9 14 7.4e-07 4e-05 25.2 0.5 3 23 402 422 401 423 0.96 10 14 0.0002 0.011 17.6 1.6 2 23 430 451 429 451 0.97 11 14 4.7e-05 0.0025 19.5 1.5 1 23 457 479 457 479 0.98 12 14 0.014 0.77 11.7 0.6 1 23 485 509 485 509 0.93 13 14 0.0012 0.067 15.0 0.8 1 23 515 537 515 537 0.98 14 14 0.00018 0.01 17.7 6.3 1 23 543 566 543 566 0.96
Sequence Information
- Coding Sequence
- ATGCAAAATGAAGATGAGTTATTAGTCGATGAAAAAATTACACCTAAAACTGAAGAGTTTTGTGAAgttgaagaaaattatttggATGCAAATGATGCAGAGGATTTTGCGGCAGAATTAAATACGAATATTACTTTAAAATCAGATGAAATAGATGTGCCAGAATCAAATGAAAACGTTCTTAATAATTCTGTTGAAATTAAATCAAAGTTAAAAATGTCAGTTAATGATTTTTCATCTGCCAACACCTCTTGTCTTTAttgtttaagaaaatttcgaAGCAAGAAGAATCGCTTCATACACGAACGTTATTGCGCAAAACGAACTTCAACCggtaaagaaaattatttgaatgtaaataaattagaagATGTTGAATCAGAATCAACTGAAGACGTTACACCAGAACCAAATGAAAACGTAAAAATTCCTATTAAAATTGAATCCAAATTAGAAACGTCAGTCAGTGATTTTTCCTCGGCCATCGCATGCCCTTATTGTTCGCGAAAATTTAAAAGCAAAACGAATCTCACGTTACATGAAAATTACTGTAAAAAAGAGACTTTCAATTGTGATCAGTGTTCAAAAACTTTTCCAAGTCAAGCTCTACTCAATATACATTTATCAACATCCCACGGGGAAGTACCTGCGCCATTTTTGACTTGTGATATATGCAATGCTGATTTCAAAGACAAATCATCATTAATCGAACATTTTTACATGCATATCGAAACCGCGTTATACTTCAATTGTGATTTTGACGATAAAACTGAAACATGTTTATGTTACGCGTGTGACAAGAATTTTTCATCAGCCAAAGAATTAATTAAACATTGTAGTGAACACGATCAGAATAAAGACTATCGATGTCGAAAGTGTACCGAAGCCTTCGACGAATACGGTTTGTTGAGAAATCACATAAGAGATCATGGAATTTTACCATACTTTTGCGATAAATGTCTCTTAAATTTTGATAGTGTACGGAAAAAGAAATTACACCAAAAAGCGCAACATTTAGGTCCAATGGTTAAAGAGACATTTAAATGTCCGCTCTGTGAAATCGTTTTTAacgatttatttaaattaaaaaatcacttGCGAGAACATAAAGCGgatttatataaatgtttacaaTGTTCCGAGTCATACAACTCACTAGCTCAACTCAGCAATCATAAAAAAGAACATAATGTGTGCAATTTATGTCCCGATTGTGGAAAACAATTCGCACGCGCCTCGTCTCTGTATCAACACATTCGAGTACATCACATGAAAATGACTCAGGTCACTTGTGACGTATGCAATAAAACGTATCATTCACCGACCAGTTTGAAAGTGCACAAACGAATCCACACGAAAGAGAAACCGTACATTTGTTCGTACTGTCCATACCGTTCACGGCAAACGTCCGACTTATATAAACATATTCGTACGCACACCGGTGAGAAACCGTACGCGTGTCGCGTTGCAAATTGTGCGCAAACATTTAAAACGTCTAGTCAATTGTACGAGCATTCGCGACAACATACCGGCGAACGTAATTATGAATGTacaatatgtaaaaagaaatttgtactATCGAAAATTCTACGGACACATATGTTAATACATTCGGATAAACGGGAGCATAAATGTGACATTTGTACAAAACAGTTTCGACGTAAATATCATTTGACAATTCATAAGTTAAAAGTTCACGATATATTAAATGTTAAACGTAATAAAACGATTCTTGatggcaattaa
- Protein Sequence
- MQNEDELLVDEKITPKTEEFCEVEENYLDANDAEDFAAELNTNITLKSDEIDVPESNENVLNNSVEIKSKLKMSVNDFSSANTSCLYCLRKFRSKKNRFIHERYCAKRTSTGKENYLNVNKLEDVESESTEDVTPEPNENVKIPIKIESKLETSVSDFSSAIACPYCSRKFKSKTNLTLHENYCKKETFNCDQCSKTFPSQALLNIHLSTSHGEVPAPFLTCDICNADFKDKSSLIEHFYMHIETALYFNCDFDDKTETCLCYACDKNFSSAKELIKHCSEHDQNKDYRCRKCTEAFDEYGLLRNHIRDHGILPYFCDKCLLNFDSVRKKKLHQKAQHLGPMVKETFKCPLCEIVFNDLFKLKNHLREHKADLYKCLQCSESYNSLAQLSNHKKEHNVCNLCPDCGKQFARASSLYQHIRVHHMKMTQVTCDVCNKTYHSPTSLKVHKRIHTKEKPYICSYCPYRSRQTSDLYKHIRTHTGEKPYACRVANCAQTFKTSSQLYEHSRQHTGERNYECTICKKKFVLSKILRTHMLIHSDKREHKCDICTKQFRRKYHLTIHKLKVHDILNVKRNKTILDGN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -