Bneb019712.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000006.1:3316368-3320827[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00071 0.038 15.8 5.1 2 23 254 275 253 275 0.97 2 12 0.00021 0.012 17.4 1.6 1 23 283 305 283 305 0.98 3 12 1.8e-06 9.9e-05 24.0 1.3 1 23 311 333 311 333 0.98 4 12 0.00013 0.0069 18.1 0.9 1 23 339 361 339 361 0.98 5 12 3.3 1.8e+02 4.2 0.7 3 23 368 385 367 385 0.78 6 12 0.00052 0.028 16.2 3.9 1 23 391 414 391 414 0.97 7 12 0.065 3.5 9.6 0.1 2 23 421 441 420 441 0.93 8 12 0.00043 0.024 16.5 1.2 1 23 447 469 447 469 0.98 9 12 0.00019 0.01 17.6 2.1 3 23 480 500 479 500 0.99 10 12 1.1e-06 5.7e-05 24.7 1.9 1 23 506 528 506 528 0.99 11 12 6.2e-06 0.00034 22.3 2.5 1 23 534 556 534 556 0.98 12 12 2.4e-06 0.00013 23.6 4.1 1 23 562 584 562 584 0.97
Sequence Information
- Coding Sequence
- atgtcaGCGATTTTGACAAACGacgatttccataaaatttgtCGCACTTGTTTAGAGGTTAAAAAAAACATGACATCTTTGTTTATGTCAGAAATTGTCAACATGTTAGAAACATGTACCACAATTACAgtgAAAGAAAATGATGGACTTCCCCGTAATATCTGTTTAGACTGTATTGACAAAATTAAtgatatttattcatttaaaacgaAATGTGAGGAATCCGATCGTTTATTACATAGAATATTAAAAGATAGCATAAAAGAAGAGAATTCACAAAAACCTGAAAATTATGATGTCCTTACAAGCAATTTAGACTCGAAGAGTGATTGTGGTGGTTGGCTTGACGAAGACTCACAAAGCAGTAGTTCCAAAACAAATAATGAGAATAGCTGccatagttttaaaaatttagattcAGGAATAAAACAAGAAATTGTAGAACAGAATAATTTGGAACAAAATTCACGAAAAGACTCAAATCTAGATACAATTTTACCATCATCTGGCGACGCAGAGACAAAGAATAAGTGGTGTATAGAAGATGGTGATTCAGACAACAATAGTGTAAGATCTAGTAACGATAATTCGTGTAATGATGATAATCCAGATGATTTTAACAGTTTTGGATTTGACACATCTAAAATGATAAAGGAAACGTTAAAAGAAAAGGATACTGAACGACAAAAACGGAAAGAATACTATGATTCATTACGTAAAAAGTTCTTCAATACGGACAAATGTGATAAAGATACGCTTACTTgcaatttatgtaaaaaaacgtACGCCAGTAGTCATTGTTTATTAAGGCATATGGACACGCATGATCAAGACAGAAAATTTCAGTATTACTGTGATGTTTGTAACAAAGGATTTTATGAAAAAGGACAAATGATTAAACATAAGAGAAGACACGTGGGCGCAACAAGACACAAATGTGAGAAATGTCCTAAAGAATTTTATGAACCTAGCGCTTTAGCTCGTCATATGCGTAAACATTTGGTTGAGCCATCATATGCTTGTAcatcatgtaataaaaaatttatggtAAAAGTCCAATTAGAACTGCATATGAGATCACACAAATCACGCGTGGAAACATGTAAAGAATGTGGAATAAAAACCGCCTATCTTCGTACACATATTTACACGCATTTAAAAGAGCGCATGTTTCCCTGTCAGTTATGTGATAAAAGTTTTAAAGTGATCGATGCACTTAAGTCTCACCATCGACGTTGCCATTATGACCAAACCAAAGTCGAGTGCgaaatttgtggaaaaacaGTTACGTCattatatatacaaaaacaTCTCCAAAttcataaaactgaaaaaacattTGAATGCGCCATATGTTCAAGACAATATCGTACAATGACTGATCTGAAAGTACATCAAAAACGACACGAAAAGAAAAACGCAAAACTCAGAGCACTTTGTACACTGTGTGGTAAACAATGTACATCTGAAGCAACCTTAAAAATTCATATGCGATCACATACCGGCGAAAGGCCGTATTCATGCAGTCAGTGTGATAAATCATTCGCAAATAGAAGTGGATTGTTTACACATACAAGAACACACACCGGCGAAAaaccatatgtatgtacaatttGTCAGAAAGCTTTTACAACTAAGACATGTTTAAATaaacatgtaatgattcatacaggagaaaaaccacaTAGTTGTCACATATGTGGAAAGGGTTTTATTCAGAAGTCACAAATGAAAACACACATGAAAGTTCATAGCAATGCTATAccataa
- Protein Sequence
- MSAILTNDDFHKICRTCLEVKKNMTSLFMSEIVNMLETCTTITVKENDGLPRNICLDCIDKINDIYSFKTKCEESDRLLHRILKDSIKEENSQKPENYDVLTSNLDSKSDCGGWLDEDSQSSSSKTNNENSCHSFKNLDSGIKQEIVEQNNLEQNSRKDSNLDTILPSSGDAETKNKWCIEDGDSDNNSVRSSNDNSCNDDNPDDFNSFGFDTSKMIKETLKEKDTERQKRKEYYDSLRKKFFNTDKCDKDTLTCNLCKKTYASSHCLLRHMDTHDQDRKFQYYCDVCNKGFYEKGQMIKHKRRHVGATRHKCEKCPKEFYEPSALARHMRKHLVEPSYACTSCNKKFMVKVQLELHMRSHKSRVETCKECGIKTAYLRTHIYTHLKERMFPCQLCDKSFKVIDALKSHHRRCHYDQTKVECEICGKTVTSLYIQKHLQIHKTEKTFECAICSRQYRTMTDLKVHQKRHEKKNAKLRALCTLCGKQCTSEATLKIHMRSHTGERPYSCSQCDKSFANRSGLFTHTRTHTGEKPYVCTICQKAFTTKTCLNKHVMIHTGEKPHSCHICGKGFIQKSQMKTHMKVHSNAIP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00239566;
- 90% Identity
- -
- 80% Identity
- -