Bneb018685.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- pita
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000005.1:32855362-32856968[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 4e-05 0.0022 19.7 0.6 2 23 264 285 263 285 0.98 2 9 3.4e-06 0.00018 23.1 2.9 1 23 291 313 291 313 0.99 3 9 1.4e-06 7.8e-05 24.3 2.2 1 23 319 341 319 341 0.99 4 9 5.1e-08 2.8e-06 28.8 0.9 1 23 347 369 347 369 0.98 5 9 5.3e-06 0.00029 22.5 5.5 1 23 375 397 375 397 0.99 6 9 1.2e-05 0.00065 21.4 3.2 1 23 403 425 403 425 0.98 7 9 3e-06 0.00017 23.2 2.9 1 23 431 453 431 453 0.99 8 9 1e-05 0.00054 21.6 0.2 1 23 459 481 459 481 0.99 9 9 0.00039 0.021 16.6 1.2 1 23 487 509 487 509 0.97
Sequence Information
- Coding Sequence
- atggtatatgattttgaaaatatttgccGAGTATGTTTATCCGAAGGGGTTATGATGTCTATATTCAAAGTCAATATTTCAAAGAAGATAATGGCCTGTTCTTCAGTACAAgTGTGGCAGAACGATGGATTACCgtcaaaaatttgtaataaatgtGTAGCCAAATTACACATAGCTTTCCAATTCAAAAAACAATGCGAAAAATCGGATGCAAAATTACGACTTTATCTAAATAATAGTTTGAGTAATGAAAATGATAATCGCACGCAACCTATCGAGGCTCCGTCAGCAGACAATAattgtcaagtttttaacaatTGCGCTCAAAATGTTGAAATTCCTAATCATGATATACGACAAGAACAGCAAACATGTCAATATAATACTATGCCAGCCGGTCCTACAACAGAACCCGTTATGGCGGACATAAATTATAATGCTCAAACGATGAATATGATTAATGGGGCCCAAGAAGCCATACCGCCCATACACATCCAAACATACGACATTCAAACAATGAATCACGTCCAATTCCATTCGTATAATGTACAACATTTAGGTGTAAATCAAATGTCACTTCCAGTAACCAccagtaataatatttttccatCAGGATTGAGTCTAGGACCAGTACAACTTTCACATCCAGTCCAAGACACCAATATCGATATGACAATGAATCAGAATCAACCAGCGACTCTAGAACAGATGACTAACGGAATCCAAAACaaagaaacaaatgaaaaagtaaaaaagaaaaaagtaaaacagGAAGACGAAGACATCAAACAGTGCAGCACCTGTGGTAAAATATTCCCCACAGCCATAAAACTATCCAGACACGTAAAAACCCACTCAAACGACATGCCCTTCAAATGCAAATTATGCAACAAAGCATTCGCGCACAGTGGTAACTATAAAATACATTTACGTATGCACACAGACGAGCGACCATTTCGATGTAGCGTGTGCGATAAAGGATGTCGACAGGCGCAGGATCTGGAAAAACATATGCGAACGCACACTGGTGAACGGCCCCATCAATGCACGTTGTGCCCTCGAGCCTTCTCCACAAGCAGTAACCTGATCGCACATATTCGTACGCATACGGGCGAAAAACCGTACGTGTGCTGTGTATGCCAAAAAGCATTTTGTCAATCGAACGAATTGACAAAACACATGAGAACTCATACTGGTGAAAAGAGTCACTCATGTTCCGTGTGCCATAAAGAATTTAACGGTTCCAGCACGCTAATTGTACACATGCGCACACAtaccggtgaaaaaccgtacGTGTGCTCGAAATGTAATAAGGGATTCGCACAATCGAGTTGTTTGACCATTCACATGAAACGACACGCGGGCGAAAAGAATTATCGGTGTAATGAGTGTAATCGCGCATTTGTAGTCGGTTCCGATCTCAAGGAGCATATGCTAACGCATTCAGCCGAGAAACCATTCAGTTGTAATTTATGTGATAAGCGATTTTTACGATCGAATGATTTGAATAAACATActataatacatacaataaaagtagaatga
- Protein Sequence
- MVYDFENICRVCLSEGVMMSIFKVNISKKIMACSSVQVWQNDGLPSKICNKCVAKLHIAFQFKKQCEKSDAKLRLYLNNSLSNENDNRTQPIEAPSADNNCQVFNNCAQNVEIPNHDIRQEQQTCQYNTMPAGPTTEPVMADINYNAQTMNMINGAQEAIPPIHIQTYDIQTMNHVQFHSYNVQHLGVNQMSLPVTTSNNIFPSGLSLGPVQLSHPVQDTNIDMTMNQNQPATLEQMTNGIQNKETNEKVKKKKVKQEDEDIKQCSTCGKIFPTAIKLSRHVKTHSNDMPFKCKLCNKAFAHSGNYKIHLRMHTDERPFRCSVCDKGCRQAQDLEKHMRTHTGERPHQCTLCPRAFSTSSNLIAHIRTHTGEKPYVCCVCQKAFCQSNELTKHMRTHTGEKSHSCSVCHKEFNGSSTLIVHMRTHTGEKPYVCSKCNKGFAQSSCLTIHMKRHAGEKNYRCNECNRAFVVGSDLKEHMLTHSAEKPFSCNLCDKRFLRSNDLNKHTIIHTIKVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -