Bneb008271.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000001.1:164591851-164601067[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0001 0.0055 18.5 3.7 1 23 154 177 154 177 0.98 2 10 8.4e-06 0.00045 21.9 0.9 1 23 182 204 182 204 0.98 3 10 0.016 0.87 11.5 0.3 3 23 208 228 206 228 0.94 4 10 3.1e-05 0.0017 20.1 0.4 2 23 235 256 234 256 0.96 5 10 3.4e-07 1.8e-05 26.3 0.3 3 23 264 284 262 284 0.96 6 10 4.3e-06 0.00023 22.8 1.5 1 23 290 312 290 312 0.99 7 10 2.3e-05 0.0013 20.5 1.2 1 23 323 345 323 345 0.94 8 10 1.7e-05 0.00091 20.9 4.1 1 23 351 373 351 373 0.98 9 10 5.3e-07 2.9e-05 25.6 4.8 1 23 379 401 379 401 0.98 10 10 0.00047 0.026 16.4 5.7 1 23 407 429 407 429 0.98
Sequence Information
- Coding Sequence
- atggAAAATGAAGACTTGGTAAACTTTGATTTCGATAATATTTGCCGAACTTGTTTAAGTCAAGATAAAgcaattgtaaatatatttgatattttagaaactgaagaatttaaatttgtaacaatattaaaaGAATGCACTTCGATACAAgTATCAGAAAATGATCACTTACCAAAAGGATTATGCCAGGATTGTATAGATCAAGTATTCAGTTACTACGAGTTCAAAAGAAAAAGTTTGATATCAGAAAAGAAATTACTTAGCATATTTCAACCTACAGAGAATGAAACTTTTAATAAAGAATCGTCCGACATCATAACTAAAGTAGAAATTAAAGACGAAAATTTAACATCGGATTATCTAGATTATGATGACTATTATAACTCAGAAGAAGTAAATATATTAGCTGACGCAAAGCACGAAAATAGTGATGTAGACTACAAAGTAGAAGAGTCTAAATTTCAGTGTGAAAAATGTGAATTAAGTTTTCCCCATAAAACAGCATTATCTAAACATAAGAGAACTAAACATGTAGAGCGAAAGTTTAAGTGCGATGAATGCGACAGAGCATAcccaaattttggaaatttaaaaaaacataaattaacaCATGGCataaattgttttgtttgttttcgaCGATTTGAAAATTCGGCAGAATTGGAGGAACATTCAAAGGAACATggaaattcaaataatttggtTTGTCAAGAATGTGGCAAAGAATTCAAAGATAGACCTAAACTATACACGCATTTAAagattcatATAGGTGAAAAGCCACATTTGTGTACATATTGCGGAAAAGCGTTTGTCGATGCATCTAATTTGGTTGTACATCAACGAATCCATAGTGGAGTTCATCCGTACACGTGCGACTATTgtaATAAAAGTTTCGCTCAACGAACATCCTGGAAAAGTCACTTAATTACCCATGATATTGCCAACAATATTCAAGGACGATCGCACATATGTTCCGTCTGTGGAAAAGGTTTCTATCGGAGATCACATTTACTAGCCCACGTGGCCTTACATTCggatattagaaaatattcgTGTACGTTTTGTCCAAAACAATTCAAAACTTCAAAAGAATTGAAAAGACATTTTAATACACACACTGgtGCGGAAATGTTTACTTGCACATACTGTGGTAAGAGTTTCAACAGGAAATGCACTTTAACCGTTCATATTAGATCTCACACCGGTGAGAGGCCCCACGTTTGTACGGTGTGCAATCGTGGTTTTATACAACGTCATGTTTTGAATCATCATATGAAAACGCATAAAAGAATGTGA
- Protein Sequence
- MENEDLVNFDFDNICRTCLSQDKAIVNIFDILETEEFKFVTILKECTSIQVSENDHLPKGLCQDCIDQVFSYYEFKRKSLISEKKLLSIFQPTENETFNKESSDIITKVEIKDENLTSDYLDYDDYYNSEEVNILADAKHENSDVDYKVEESKFQCEKCELSFPHKTALSKHKRTKHVERKFKCDECDRAYPNFGNLKKHKLTHGINCFVCFRRFENSAELEEHSKEHGNSNNLVCQECGKEFKDRPKLYTHLKIHIGEKPHLCTYCGKAFVDASNLVVHQRIHSGVHPYTCDYCNKSFAQRTSWKSHLITHDIANNIQGRSHICSVCGKGFYRRSHLLAHVALHSDIRKYSCTFCPKQFKTSKELKRHFNTHTGAEMFTCTYCGKSFNRKCTLTVHIRSHTGERPHVCTVCNRGFIQRHVLNHHMKTHKRM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00239572;
- 90% Identity
- iTF_00239572;
- 80% Identity
- -