Basic Information

Insect: Brachynemurus nebulosus
Gene Symbol: -
Assembly: GCA_035578155.1
Location: JAPWDM010000001.1:184942262-184945219[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 0.22 12 8.0 0.4 1 23 309 331 309 331 0.97

2 21 0.00028 0.015 17.1 0.5 1 23 336 358 336 358 0.97

3 21 0.0074 0.4 12.6 1.4 1 23 365 387 365 387 0.97

4 21 0.024 1.3 11.0 0.1 1 23 393 415 393 415 0.98

5 21 0.013 0.72 11.8 0.4 1 19 448 466 448 469 0.95

6 21 0.87 47 6.1 4.3 1 23 479 502 479 502 0.95

7 21 0.093 5 9.1 0.3 1 23 515 537 515 537 0.98

8 21 0.0057 0.31 13.0 0.7 1 23 542 564 542 564 0.94

9 21 0.00059 0.032 16.0 2.1 1 23 570 592 570 592 0.98

10 21 0.18 9.6 8.3 0.1 2 23 599 620 598 620 0.95

11 21 4.6 2.5e+02 3.8 0.5 2 23 630 650 630 650 0.92

12 21 0.00015 0.008 18.0 1.3 1 21 656 676 656 677 0.93

13 21 0.081 4.4 9.3 2.6 1 19 702 720 702 725 0.81

14 21 0.014 0.75 11.7 2.6 1 23 733 755 733 755 0.99

15 21 0.64 35 6.5 1.7 1 21 770 790 770 793 0.87

16 21 0.00021 0.011 17.5 5.6 1 23 813 835 813 835 0.98

17 21 0.021 1.1 11.2 4.7 2 23 842 864 841 864 0.96

18 21 0.00022 0.012 17.4 0.1 2 23 872 893 871 893 0.97

19 21 0.0056 0.3 13.0 4.7 1 23 899 921 899 921 0.99

20 21 9.3e-05 0.0051 18.6 0.2 1 23 927 949 927 949 0.98

21 21 5.2e-07 2.8e-05 25.7 1.6 1 23 955 977 955 977 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	0.22	12	8.0	0.4	1	23	309	331	309	331	0.97
2	21	0.00028	0.015	17.1	0.5	1	23	336	358	336	358	0.97
3	21	0.0074	0.4	12.6	1.4	1	23	365	387	365	387	0.97
4	21	0.024	1.3	11.0	0.1	1	23	393	415	393	415	0.98
5	21	0.013	0.72	11.8	0.4	1	19	448	466	448	469	0.95
6	21	0.87	47	6.1	4.3	1	23	479	502	479	502	0.95
7	21	0.093	5	9.1	0.3	1	23	515	537	515	537	0.98
8	21	0.0057	0.31	13.0	0.7	1	23	542	564	542	564	0.94
9	21	0.00059	0.032	16.0	2.1	1	23	570	592	570	592	0.98
10	21	0.18	9.6	8.3	0.1	2	23	599	620	598	620	0.95
11	21	4.6	2.5e+02	3.8	0.5	2	23	630	650	630	650	0.92
12	21	0.00015	0.008	18.0	1.3	1	21	656	676	656	677	0.93
13	21	0.081	4.4	9.3	2.6	1	19	702	720	702	725	0.81
14	21	0.014	0.75	11.7	2.6	1	23	733	755	733	755	0.99
15	21	0.64	35	6.5	1.7	1	21	770	790	770	793	0.87
16	21	0.00021	0.011	17.5	5.6	1	23	813	835	813	835	0.98
17	21	0.021	1.1	11.2	4.7	2	23	842	864	841	864	0.96
18	21	0.00022	0.012	17.4	0.1	2	23	872	893	871	893	0.97
19	21	0.0056	0.3	13.0	4.7	1	23	899	921	899	921	0.99
20	21	9.3e-05	0.0051	18.6	0.2	1	23	927	949	927	949	0.98
21	21	5.2e-07	2.8e-05	25.7	1.6	1	23	955	977	955	977	0.99

Sequence Information

Coding Sequence: ATGTCTTTGAAGATTTGTCTCGACTGCATAAAACAAATTGATTTGtactacacttttttccaaaaaagttTGGAAGCCGACTTCATCTTACAACTAAGCTACAATTTGTATCAAGTAACACCGAGAGAACTAAATCAAATTAAAACTGCACAGCTAGCAACTGAAGAAAATGGATCAGAAAATGACAGAAATGCTACTAATACATCAAATATACAGGATCAAATTGACTCTGGACCAGCAAATCTTAAAGAAAATagcgaaattttttatattaaagatgAAGAGCTTGATTTAAGTGTTGAGATTGAGGATGAAAAGAATGTGTTTCGTGAGCAATTATCTCCAGAGATCGAATCAGATCGCAATGAAGATAAATGCGATTTTAAACTTCCAAATATTGAAGATACAGAATCATTAGATCTTGAAGAAAACGATGGAACGTCCTCAGATATGTATATCGAATTAGAAAAACGCGAAAAAATTCGAATTGAAAAAATACCCCCAAAAAATTCggataaaaccaaaaatattgaaataacaaaaaatagtcTGCTCTGTGGAAAACTATCTCCGGATATTTATATCCAGATAGAAGGAAgtgaaaatgatgaaaattatGAAGAGGAACCTGATCCTGTGCGTCCAAgtattaaagaaaaaagtacGTCAGAAGACATCCAAACTGATACTGGACCATTcgattttaaagaaaatgaaattgGAGCTGCTGACTCAATAATTGAGGCTGAAAGTGATTCTGCTTGTGACCAATTATTCTCCGATACCGATACTAAATCAGAAGGaagaaaaaatgacaaaaatattgaaaataaactcaCAACAAATAcgacaaaaaatgaaaatgaaaacagTTTTAAGACTAAATGTAAACTTAATTCGGTTGAAATTAaagacattaaaatattttcatgtgaTATTTGCATGAAAAATTGGATTTCTCAAGCACATTTAGAAAAACATCTAGAAATACATCGAAAACATAAATACAGATGTGACATTTGTGGTTTAACTTACAATACTGCCCAATTATTAAAGTCACATACTTTTATTCACACGAATGAATATCGTGAATATATTTGTGATATctgtagtaaaaatttttttatgaaaccaCAATACCAACGTCACAAATCAATCCACAAAAAGAGAAAACAATACGTCTGTGACGACTGCGGTATTATAGTGGCCGAGAGAAAAACAATGAAACGTCATAAATTGAGCCACTGTGGTGAGTGCCAAAAACAGTTATGTCAAATATGTGGCATTAAAGTCGCTTATTATCAACAGCATATGCGTAATAAGCATGATGCTGAAAAGCAGTATAAGTGTAAAAATTGTCGGCGAGTATTTGTACGAAAATTAGCTTTTCAGGAGCATGAAGTATCATGTACAAATAATACATTGGAGAATAAGTACCACTGTGAAGAATGTTCAAAATCATATAAAATCTACAAATTCTATCAAATTCATCTTCAACAGAAGCATAACATACCGAAAAAATTAGTCGAAAACACTGAAATATTTCAATGTGATATTTGTATGAAAAATTGGATTTCCCAAGAATATTTAGAAAAACATTTAGAAACAcaccaaaaacataattataaatgtaacatttgTGGTTTAACATACGAAAGTCTACAATATTTTCAATCACATGCTATTTTTCATGAAGATAATAAACAATACACGTGtgatatttgtaataaaacGTTTTTTATGATATCACAATATCGACGTCACAAACTGATCCATAGTAAGAAAACAAAATCAGTCTGTAACGAATGCGGTATTGTAATGGATAACCTTCAAAGTTTGGAAAAACATAAAACGATCCATAACGGCAATGTTGATGACCAAAAACGTGTATGTCAAATATGTGGCGCTAAAATCAGTATTAATAATTATCTGCGCCATATGCATATTCACGATTCCGAAAAGAAACACAAATGCAAAAAATGTGGCCGAGAATTTGTACAGAAACCAAGTCTCAAAAAACATGAAATGTCATGTAATAAAGGACTGAATCGACCTTATGGAGGCAGACCGCGTACAGGAATGCAAAATCACTGTACGCGCGTATACAAATGTCCCGAATGTCCAAAATCCTACCGTAACTATCTTGGCGTTCGACTTCATTGCCGACAGAAACATGGAAAAGAATGGTCCGGCGAATATAAATGCGTCCAATGTAACCGCACATTTCATTTAATTGAGTCACTGAGACAACACGCACGCTCCCACTTGTCCACTTGCCACAACGAGTCTGGAACATTGACGTGCAGATATCAGTGTTCCGCGTGTCCAAAATCGTATACGACATACCAACGTTTTTGGTATCATTTCCTAGACAGTCATGTAATATCTGAAAATGAGCCTAGCACAATGCAAATAAATGAATCACGTGAAGATGAACATAAATGTGTCGAATGTAATCGTACATTTCGTTTTAAATGGACATTTAAACGACACATTCGCTCACATTCGGTTACACTCGAGACCACATGTCAATTTTGTAATCTCACCTTTCAATCGTACCACGAATTACAAAAACATCGTAAAATGAGCCATTTGCCGTCAAAGAAATACGTTCAGTGCCAACAGTGCGGTAAAATGTTGTCGTCGACATCGGCATTAGAAATACATATGTCAGTTCACACGGGCGCCCGCCCATACAAGTGTCGCTATTGCGAGAACACGTATAGACAATCTGCGCACGTATTCAGACATGAACGCACGCATATTGGTCTGAGACCGTATAAATGTGTGGATTGTGATAAGAGTTTCATAGATCTGAGCGGTTTGGTTGAACATAATCAACGACATCGCGGTGATAAGCGATTTAAATGTCCCATTTGTGATAAGGCATTCTATCGGTCTAGTTATAtgaaaaaacatttacttaCACATAATCCGGGAGATCCAGATCAGTTGTAG
Protein Sequence: MSLKICLDCIKQIDLYYTFFQKSLEADFILQLSYNLYQVTPRELNQIKTAQLATEENGSENDRNATNTSNIQDQIDSGPANLKENSEIFYIKDEELDLSVEIEDEKNVFREQLSPEIESDRNEDKCDFKLPNIEDTESLDLEENDGTSSDMYIELEKREKIRIEKIPPKNSDKTKNIEITKNSLLCGKLSPDIYIQIEGSENDENYEEEPDPVRPSIKEKSTSEDIQTDTGPFDFKENEIGAADSIIEAESDSACDQLFSDTDTKSEGRKNDKNIENKLTTNTTKNENENSFKTKCKLNSVEIKDIKIFSCDICMKNWISQAHLEKHLEIHRKHKYRCDICGLTYNTAQLLKSHTFIHTNEYREYICDICSKNFFMKPQYQRHKSIHKKRKQYVCDDCGIIVAERKTMKRHKLSHCGECQKQLCQICGIKVAYYQQHMRNKHDAEKQYKCKNCRRVFVRKLAFQEHEVSCTNNTLENKYHCEECSKSYKIYKFYQIHLQQKHNIPKKLVENTEIFQCDICMKNWISQEYLEKHLETHQKHNYKCNICGLTYESLQYFQSHAIFHEDNKQYTCDICNKTFFMISQYRRHKLIHSKKTKSVCNECGIVMDNLQSLEKHKTIHNGNVDDQKRVCQICGAKISINNYLRHMHIHDSEKKHKCKKCGREFVQKPSLKKHEMSCNKGLNRPYGGRPRTGMQNHCTRVYKCPECPKSYRNYLGVRLHCRQKHGKEWSGEYKCVQCNRTFHLIESLRQHARSHLSTCHNESGTLTCRYQCSACPKSYTTYQRFWYHFLDSHVISENEPSTMQINESREDEHKCVECNRTFRFKWTFKRHIRSHSVTLETTCQFCNLTFQSYHELQKHRKMSHLPSKKYVQCQQCGKMLSSTSALEIHMSVHTGARPYKCRYCENTYRQSAHVFRHERTHIGLRPYKCVDCDKSFIDLSGLVEHNQRHRGDKRFKCPICDKAFYRSSYMKKHLLTHNPGDPDQL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -