Bneb013950.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000003.1:36568893-36576023[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0012 0.066 15.1 6.3 2 23 166 187 165 187 0.97 2 13 7.9e-06 0.00043 22.0 1.5 1 23 193 215 193 215 0.98 3 13 0.0012 0.064 15.1 1.8 1 21 221 241 221 242 0.93 4 13 4e-05 0.0022 19.7 0.1 1 23 249 271 249 271 0.96 5 13 2.8e-05 0.0015 20.2 8.7 1 23 370 392 370 392 0.96 6 13 7.8e-06 0.00043 22.0 5.3 1 23 398 420 398 420 0.98 7 13 1.1e-05 0.00062 21.4 0.7 1 23 426 449 426 449 0.97 8 13 0.011 0.62 12.0 1.2 1 23 461 483 461 483 0.97 9 13 0.25 14 7.8 1.2 1 21 490 510 490 511 0.93 10 13 7.1e-05 0.0039 18.9 1.1 1 23 519 541 519 541 0.96 11 13 9.8e-05 0.0054 18.5 1.9 1 23 547 569 547 569 0.97 12 13 3.3e-05 0.0018 20.0 0.8 5 23 579 597 575 597 0.93 13 13 1.3e-05 0.00073 21.2 0.1 1 23 603 625 603 625 0.98
Sequence Information
- Coding Sequence
- ATGAACCCTgttttaaaatatgattttgataaaatatgtcGCGCGTGTAAAAATGAATCAGATGAACTACAATCAATGTGGGATAAATTTGAAGAATATCCTGTCTTAGCTGAAATGTTAATGGTGTGCACTTCAGTTCATGTGGAAGTTGGAGATGGCTTACCAAATTCAATGTGTATGCAGTGTGTAAATCAATTAAACGAtgcatataatttcaaaaagttATGCGAAGATACCGATACGTCATTACGATTATGGCTACAAAAAGAAAGCAATGAAATAAAAGAAGAGAGTAGTAGTGTCGTTTATGATGACGAAGATGATATCAACAATGACTTGGATTATTATCAAAATGGAAACGACAACCACATTAAAAACGAATATTCAGTTGACGATGAAATAAGTATAGAAGAAGAAGGGCCCCAAACGTTTCCGTATCAGCGAAATGAACAATTATCTGTACATAATAATGTACTGCATAACACTGAGCAACTTACATGtaaaatttgctttaaaaaattccattttcgtAGCCACCTGGAACGACATTTGCAAATACATAATCCCgccaaaatatacatatgtaaaataTGTGATAGACGTCTGACCCGCTTAGAACATCTCAAAAGACATATGATAATCCATTTAAAGACCAAACCTCACACCTGTCGAATATGTAATCGGGGCTTCAATCATCCAGATAATTTATACAATCACGAAAAACGTTGTAAAGGGGATCGCACGTACGTTTGTCAGATCTGTAATCGGGGATTCAATCGTCCCGATAGTTTAGATGCTCACATGGGTAATCACGACACCAATGTGGATATAAAACCAATGTTAGATTCgttagaaaatattgaaaagtatATTCTAGTTGAAAATTTAGAATCAAATGAATTACGTGAATTTCAAGAATACATTGAACCGCAATTTAATGTTCTCGAAACAAACCAAAAACACAATGATGTTGCATATATCAACGAAAATTCTGATCGACAAATCGAAATATCTGAAGAATCTGTTCACATAAAACGTAAACGGGGCCGTCCAAAGAAAGCAGACAGCGTAAAATTGAAACGAGACAAGACCGACATAACAAACATTTACTGTTGTAGGTATTGtcaaaagaaatttaaacgtTCCAGTCATTTAAAACGACATATGCTGGGTCACGGTGAATTTAAACCATTCGTTTGTCATCTGtgtccaaaaaaatttacgcGTCGTGATCATCTGTTGCGGCACGTTAAATCGCACATTGAAAAGAAAGAATTCAAATGTGACTTGTGCAGTAGACAATTCAGTCGCGCTGAACAACTACAACAGCATATGGCGGTGAAACATCTGATtggcgaaaaaaaattcaccgaAAAGAAATACCGGTGCGACATCTGTAATAAATTGTTCACAACAGAGAAATATCGTGATACGCATGTGCGTGCACATATGGAAGTGGTTAAAGAGCATACGTGTAAGGCGTGCTTTATAAAATTCGAGAATAAACAAGATTTACAAGATCATGAGAAACAGAATATCGAATGTTCGAAAAAGTATCTGTGTTCGGAGTGTGGACAGcgttttatgaaaaagaattatttggTCGTACATATGCGACGACATCGCGGcgaaaaaccgtataaatgtaaattttgcGGTAAAGGATTTCCACGTTCAACGGATGTGACTCGGCATGAAAAGTTTCATACTGGAGAAAAGAATCATCTCTGTATTATTTGTGGCAAAGGTTTTGGACGGGCATATAACTTAACATTACACATGCGCACACATACTGGTGAACGGCCGTACGCTTGTACTTACTGTGAAGCCGCCTTTGCACAGAGCAATGATCTCCGAGCCCACATTCGCCGGCATACTGGTGAACGTTATCACTGCGATATATGCAACGATGCATTTTTGATGGGTTATTTACTGAAGCAGCATAAGAAAAATGTACACGGCGTGGAATGTCAAAGTGTACGTATCCAACcgtttaaaaaagaaacaaattaa
- Protein Sequence
- MNPVLKYDFDKICRACKNESDELQSMWDKFEEYPVLAEMLMVCTSVHVEVGDGLPNSMCMQCVNQLNDAYNFKKLCEDTDTSLRLWLQKESNEIKEESSSVVYDDEDDINNDLDYYQNGNDNHIKNEYSVDDEISIEEEGPQTFPYQRNEQLSVHNNVLHNTEQLTCKICFKKFHFRSHLERHLQIHNPAKIYICKICDRRLTRLEHLKRHMIIHLKTKPHTCRICNRGFNHPDNLYNHEKRCKGDRTYVCQICNRGFNRPDSLDAHMGNHDTNVDIKPMLDSLENIEKYILVENLESNELREFQEYIEPQFNVLETNQKHNDVAYINENSDRQIEISEESVHIKRKRGRPKKADSVKLKRDKTDITNIYCCRYCQKKFKRSSHLKRHMLGHGEFKPFVCHLCPKKFTRRDHLLRHVKSHIEKKEFKCDLCSRQFSRAEQLQQHMAVKHLIGEKKFTEKKYRCDICNKLFTTEKYRDTHVRAHMEVVKEHTCKACFIKFENKQDLQDHEKQNIECSKKYLCSECGQRFMKKNYLVVHMRRHRGEKPYKCKFCGKGFPRSTDVTRHEKFHTGEKNHLCIICGKGFGRAYNLTLHMRTHTGERPYACTYCEAAFAQSNDLRAHIRRHTGERYHCDICNDAFLMGYLLKQHKKNVHGVECQSVRIQPFKKETN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -