Bneb013948.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000003.1:36555542-36559063[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00021 0.011 17.5 1.6 1 23 121 143 121 143 0.99 2 13 2.1e-05 0.0011 20.6 2.6 1 23 150 173 150 173 0.94 3 13 0.01 0.57 12.1 0.9 2 21 180 199 179 200 0.93 4 13 0.00014 0.0079 18.0 0.1 1 23 207 229 207 229 0.98 5 13 0.003 0.16 13.8 0.4 1 23 302 325 302 325 0.96 6 13 7.1e-05 0.0039 18.9 5.1 1 23 331 353 331 353 0.99 7 13 0.024 1.3 11.0 2.4 1 23 359 382 359 382 0.94 8 13 0.0073 0.4 12.6 0.4 1 21 389 409 389 410 0.84 9 13 0.00046 0.025 16.4 0.2 2 21 419 438 418 439 0.94 10 13 9.4e-06 0.00051 21.7 3.0 1 23 447 469 442 469 0.96 11 13 1.4e-06 7.5e-05 24.3 1.6 1 23 475 497 475 497 0.98 12 13 2.3e-05 0.0013 20.5 0.6 5 23 507 525 503 525 0.93 13 13 0.00012 0.0065 18.2 0.0 1 23 531 554 531 554 0.97
Sequence Information
- Coding Sequence
- ATGCAACTGGCAGATATGCTAATGGCGTGTGCTTCAGTACAaGTATCAGAAACTGATGGTTTACCTACatcaatttgtaaaaaatgtacagtaaaattaaaaaatgctttcaattttaaaattcagtGTGAAAAGACGGATAAAAATTTACGACAAACGTTTGGATCTAATGAGGTGAAACACGAAAATAACTGTGATAACGATGATAATGGCTTTGCCGATGATAACGATGACAACACAGACgtagaaaattatgaaaatgttaGTAGTCCGGAATTTAACAACATTCAAGTGAAAAAAGAAGAATCTTCGAGTGAATCCGAAAATTCTGATTCGGATGATAGTAAAAAGCCGGTTGCGTATCGTTGTAAATTATGTCTTAAACAATACTCATCGGTAAGCAAGTTAAATAGACATGTTCGCGTTCATTTCCCTGCTAAAAAGAAGTATActtgtaaaatatgttttaaatcgTTATCACGAAAAGAACATTTAAAACGTCACATTATTGGTAACCATGTCAAAGTGAAGCCATGCATTTGTCCTACGTGTAAACGGGGCTTCGTAAACGAGGACAGTCTATATAATCACACGAAACAATGTAAGGGACAGAAACCATTCGTTTGTCCTCTGTGCAGTCAAGGATTTATACGCGAGGATAGTTTACAAGTTCATTTGAATCAGCACGATTCGAAAATTGTCCAGAAAAATCCCACATTAGATTCTATAGATAATATTGAGAGTTATATACAAGTTGAAGAAGAACGCGATAACGACACTGACCAAATGTTAAAGCTCTTAGTCGACGTGAACGATGTTAAAGAAGACAAGCTTGTTAAAGAAGCCGACGTGGCGAaaccaagaaaaaaaacttGGAAACAAAAACGAGTCACGAACGACACATTCACGTGTCGAATTTGTGATCAGACTTTCGTAGGCCCTTTCGTCTTCAAACAACATATGTTAAATGAACATCAACAAGAGAACCCTTTCAAATGTGACGTTTGCAAAAAATCATTTCCGAGATATGACCATTTTCTAAGACACTCAAAAACGCACTTAAAAGGAAAACGATTTGCTTGCGATCAGTGTCCAAGAAAATTTTCATGTGAATCGCTATTACAGAAACATACAAATGCAAAACACGGTGTGGTCGagaaaaaatttgaatgtaGCATATGTAACAAGTCATTTTCCACCGAAAATCGGAGAGCATATCATTTGAGAGAGTTCTGTTTAAAAGATCAGCCAATCCGTTGTAAACGCTGTGAAAAAGAATTTCCCAATAAAGACGAATTAGTGAAACATTTAAAATTGGCCAACGAGTGCTCCAAGCGATTTTTGTGTTCAGACTGTGGTCAAcgatttacaaaaaatgaatatttgatCACGCATATGCGTCGACATACCGGCGAAAGACCGTTTAAGTGCAATTACTGCGATAAAgCATTCCCACGAACTTCTGATTTAAAGTCACATGAAAAATCTCATACCGGTGAAAAGCCGCATTTGTGTATTATTTGTGGTAAAGGTTTTGCAAGagcaTACATGTTAACGGTGCACATGCGTACACATCCCGGAAAAAAGCCTTATGTATGTGAATATTGTGAAGCGGCATTTGTATATAACGGCGCATTAAAAACACATATTAGAGAAGTTCATCCACATACacttaaaaaataa
- Protein Sequence
- MQLADMLMACASVQVSETDGLPTSICKKCTVKLKNAFNFKIQCEKTDKNLRQTFGSNEVKHENNCDNDDNGFADDNDDNTDVENYENVSSPEFNNIQVKKEESSSESENSDSDDSKKPVAYRCKLCLKQYSSVSKLNRHVRVHFPAKKKYTCKICFKSLSRKEHLKRHIIGNHVKVKPCICPTCKRGFVNEDSLYNHTKQCKGQKPFVCPLCSQGFIREDSLQVHLNQHDSKIVQKNPTLDSIDNIESYIQVEEERDNDTDQMLKLLVDVNDVKEDKLVKEADVAKPRKKTWKQKRVTNDTFTCRICDQTFVGPFVFKQHMLNEHQQENPFKCDVCKKSFPRYDHFLRHSKTHLKGKRFACDQCPRKFSCESLLQKHTNAKHGVVEKKFECSICNKSFSTENRRAYHLREFCLKDQPIRCKRCEKEFPNKDELVKHLKLANECSKRFLCSDCGQRFTKNEYLITHMRRHTGERPFKCNYCDKAFPRTSDLKSHEKSHTGEKPHLCIICGKGFARAYMLTVHMRTHPGKKPYVCEYCEAAFVYNGALKTHIREVHPHTLKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -