Basic Information

Insect: Brachynemurus nebulosus
Gene Symbol: TyrRS-m
Assembly: GCA_035578155.1
Location: JAPWDM010000002.1:46487731-46532318[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.0082 0.45 12.4 0.3 5 23 2 21 1 21 0.95

2 19 0.14 7.5 8.6 0.6 2 23 32 51 31 51 0.90

3 19 4.1e-05 0.0022 19.7 1.6 1 23 57 80 57 80 0.97

4 19 0.00025 0.013 17.2 3.7 3 23 91 111 90 111 0.96

5 19 0.0054 0.29 13.0 0.2 1 23 117 139 117 139 0.98

6 19 0.0094 0.51 12.3 5.3 1 23 147 169 147 169 0.96

7 19 0.021 1.2 11.1 0.3 1 16 175 190 175 192 0.89

8 19 4e-05 0.0022 19.7 2.5 1 23 580 603 580 603 0.97

9 19 0.0011 0.058 15.3 3.2 1 23 612 634 612 634 0.95

10 19 0.019 1 11.3 4.3 1 23 640 662 640 662 0.99

11 19 0.0001 0.0055 18.5 1.4 3 23 689 709 687 709 0.95

12 19 0.019 1 11.3 4.5 1 23 717 740 717 740 0.95

13 19 1.4 78 5.4 0.9 6 23 752 770 750 770 0.73

14 19 0.35 19 7.3 4.2 1 23 776 799 776 799 0.96

15 19 0.024 1.3 11.0 2.3 1 23 808 830 808 830 0.94

16 19 0.0045 0.24 13.3 0.2 1 23 836 858 836 858 0.97

17 19 7.8e-05 0.0043 18.8 1.7 1 23 866 888 866 888 0.99

18 19 4.8e-07 2.6e-05 25.8 1.6 1 23 894 916 894 916 0.98

19 19 3.7e-05 0.002 19.8 0.7 1 22 927 948 927 948 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.0082	0.45	12.4	0.3	5	23	2	21	1	21	0.95
2	19	0.14	7.5	8.6	0.6	2	23	32	51	31	51	0.90
3	19	4.1e-05	0.0022	19.7	1.6	1	23	57	80	57	80	0.97
4	19	0.00025	0.013	17.2	3.7	3	23	91	111	90	111	0.96
5	19	0.0054	0.29	13.0	0.2	1	23	117	139	117	139	0.98
6	19	0.0094	0.51	12.3	5.3	1	23	147	169	147	169	0.96
7	19	0.021	1.2	11.1	0.3	1	16	175	190	175	192	0.89
8	19	4e-05	0.0022	19.7	2.5	1	23	580	603	580	603	0.97
9	19	0.0011	0.058	15.3	3.2	1	23	612	634	612	634	0.95
10	19	0.019	1	11.3	4.3	1	23	640	662	640	662	0.99
11	19	0.0001	0.0055	18.5	1.4	3	23	689	709	687	709	0.95
12	19	0.019	1	11.3	4.5	1	23	717	740	717	740	0.95
13	19	1.4	78	5.4	0.9	6	23	752	770	750	770	0.73
14	19	0.35	19	7.3	4.2	1	23	776	799	776	799	0.96
15	19	0.024	1.3	11.0	2.3	1	23	808	830	808	830	0.94
16	19	0.0045	0.24	13.3	0.2	1	23	836	858	836	858	0.97
17	19	7.8e-05	0.0043	18.8	1.7	1	23	866	888	866	888	0.99
18	19	4.8e-07	2.6e-05	25.8	1.6	1	23	894	916	894	916	0.98
19	19	3.7e-05	0.002	19.8	0.7	1	22	927	948	927	948	0.94

Sequence Information

Coding Sequence: atgatTTGTGATAAAACATTTATTCGAGAAGATACATTCCTCAAACACCAAAAATTATCCCACGGACCAAATCCACAACATAAACAACCCTCAGTATGTAATATTTGTGGAAAATCAGTCGTCGAATTAAAACATCACATCCGGCGTGCCCACAGTAACAACAAGCCCCACCAATGTTCTCAGTGtgatcaaaaatttgtttatcccGCTCACTTGATCGTTCATATTCGTCGAGTTCATGACGGTATTAAGCCGGGTAAACCCAACTTATGCACTGAATGCGGTAAAagtttttacacgaaaaccgaTTTAAAATCACATCAGTTTCATCATTTGGGCCAGAAACCGTTTAAATGCACTGTGTGCGACGAAGAATTCCGTTGGAAAGCTGGTTTATTGGGTCACATGAAGAAACATGCTACCAATCGTGAACGCAAGCACGCATGTACTGAGtgtgataagaaatttttctgcGCACAAGAACTCAAGACGCATATGAGAACACATACTGGTGAACGACCGTTTTTATGcaaaatttgccaaaaatcGTTTACGCATAGAGGATCGTTGGTTGAAATAAATCCAGTACCTGCTGATGCGGGTTATATAATTGTTTTCGATTATAAAAGAACTTTAGATTTTACGTGTAATGTGACCTCGTCACCACCAACTAGTGATTATGAAGTGAAATGGTACAAAGGAACTGAAGAGGTGTCGTCAGTCGATGACTTGAAATGGAGAGTGACTTTCGAGAACTCGCCAAACACCGGCTTACACACGTTAACAATTAGGAGGCCAATGCAAACTGATAGAAAAGCTATAGTAAAAGTTCAACCGAACATAAATTTAGTAGAGGGTGAAAAACTACGAATCCATTGTTTATCACTCGGTAGACCGTTATTAGTATGGCAAGTTGGCAATGAAACGTACGATGGCACTGAAGGGGAGGACAGTcgaataaaattatacaaagatgAAGAAATCGATTTACCCAATGCAGTCCTAATTATCGAAGAAGCTCAAACGTCCGATCGCGGTCATTTTAAATGTATAGCCAAGAATCCATTAACACATGAAGAGGAAGCATCGGCTGAGAGTTTTATTAGAGTTAAAGCAATCGGTAGACCGCTATTAGTATGGCAAGTTGGCGATAAAACGTACGATGGCACTGAAGGGGAGGACAGCcgaataaaattatacaaagatgAAAAAACCGGTTTACCGAATGCAATCCTAGTTATCGAAGAGACTCGGATGTCCGACCGCggttattttaaatgtatagcCAAGAATCCATTAACACATGAAGAGAAAGCATCGGCTGAGAGCTTTGTTAGAGTTAGAGAGGCAAACAATTTACCAAATTCTATATGCAAAGAATGTATCGGAAATATTAACGCTGCCTTTACATTAAAACAACTTTGTATATATTCCGAGCAAATACTTAATAATGTTActattaaaactgaaaaatttgaaaatgattgtGAAGACAATAAAAATTTGGCTGATGAAAATTCAATTGTTGAAGATATTGTTAAAACCGAACCCACTGAACCAAAAATTGAAACTGTTGATAATACAATTCTGGTAAACAATGAAGCTATGACTCTGGTAAAAGATGATTCAGAATTGAGTGGAGttatgaaaaatgttaaaagtgaaaatgataCTGCGGAGCCTTTAACTAATGTTACGGAAACAGTTTGTGAAACGAATGATACCAGTAACAAACCGTACACATGTTCGCAATGTGGTCAAAAATTTTCTCGCAAACAGTACATGACTCGTCACATTAGTCGAATACATGACGGCATCAAAACAGCCAGGTCACATGTGTGTACTCAATGCGGTAAAGGTTTCTATTCACGGGGCGAACTCGAATCCCATCAATTTCATCATCTCGGTCAAAAACCGTTCAAATGTAAACTGTGTAGAAAAGAATTTCGTTGGGCAAGCTGTTTACGAATTCACCTGAAAAGACATCCTAAAAATTCGGACGGGACATTCGTTGTAATTAAAGAAGATGAAACGGAAGACTCCATTGACCCATCATCGACGATATGTAACGAATGCGGAAAAGAATTTAATAATCGTCGCAGTTTTAAACGGCACAAAATAATACATATTCCCAAAGACCAACGCTTGCATTATTGCtcgaTCTGTGATCGAAAATATTTTCGAGAAGATTCATTCCTCaaacatcaaaaattattcCATGGACCAAATTCACAACCGATAAAACCTTCCGTATGTGACACTTGCGGAAAATCAGTGATGTGCCTGAAAGCTCACATTCGGCGTGTCCACAGTAACGTGAAACCTCACAAGTGTCCTCAGTGCGAGGAGCGATATCTTTATCCTTATCACTTAAATCTTCATATTCATCGTGTTCATAAAGGTGTTAAAATGGATAAACCGTTCTTGTGCAACGAATGCGGGAAACGTTTCCACTTAAAAACCGCATTAGATGCCCATCTAATTCATCATTTGGGCCGAAATCCATTCAAATGCACCGTGTGTGGAAAGGAGTTTCGATGGATAGGCGGTTTACGGGGTCACATGAAGTTACATGATTACAATCGTGaatttaattacaaatgtaCTGAGTGTAACAAGAAATTCTTTCGCGCACAAGAACTTGTGTTGCATAAAAGAGTACATACAGGAGAACGGCCGTATTCATGTGAAATTTGTCAGAAATCGTTCGGTTCGAATTCAACGTTGCGTAAACATATGAAAATGCATAAGAAAATAGAGGATTTGGGCGAACGGCcgtatttatgtaaaatttgtcAGAAATCATTTACTCGAGCGGGAGCTTTCACTAACCATATGAAAAagGAACGTGGAATTATACAGGAATTATTCCCTTCGACGGCTAACCGaattcTTGATAATGCCACATGGTATGAAAATATTAACGCTATTCAGTACATGCGCTTGGCTCGACATTTTCGAATGGGGTCCTTAATGAATAGAACCAGTATACGGGAACGTCTCTCCTCCTCGCAAGGGATGAGTTGTGCGGAAtttatgtatcaaatttttcaatcgTACGACTGGCTTTATTTGCTGGATAAACATAATTGCAGATTTCAGATTGGTGGAAGCGATCAGTTGGGAAATATGAAATCAGGGCATGATTTAATTGGGAAATTAACTGACAAAAATACTtacgatgatGCGCTAAGGATTATCTCTGCAGGTggattttatataaataatcaaCGAACTACGAATTTTGAGGAAGCTATTGTGCCTGGAATTCATATATTGCCAACTAATACAACGTTGGTGCGTGTAGGGAagaaaaattatcatataattCGATGGATATCATAA
Protein Sequence: MICDKTFIREDTFLKHQKLSHGPNPQHKQPSVCNICGKSVVELKHHIRRAHSNNKPHQCSQCDQKFVYPAHLIVHIRRVHDGIKPGKPNLCTECGKSFYTKTDLKSHQFHHLGQKPFKCTVCDEEFRWKAGLLGHMKKHATNRERKHACTECDKKFFCAQELKTHMRTHTGERPFLCKICQKSFTHRGSLVEINPVPADAGYIIVFDYKRTLDFTCNVTSSPPTSDYEVKWYKGTEEVSSVDDLKWRVTFENSPNTGLHTLTIRRPMQTDRKAIVKVQPNINLVEGEKLRIHCLSLGRPLLVWQVGNETYDGTEGEDSRIKLYKDEEIDLPNAVLIIEEAQTSDRGHFKCIAKNPLTHEEEASAESFIRVKAIGRPLLVWQVGDKTYDGTEGEDSRIKLYKDEKTGLPNAILVIEETRMSDRGYFKCIAKNPLTHEEKASAESFVRVREANNLPNSICKECIGNINAAFTLKQLCIYSEQILNNVTIKTEKFENDCEDNKNLADENSIVEDIVKTEPTEPKIETVDNTILVNNEAMTLVKDDSELSGVMKNVKSENDTAEPLTNVTETVCETNDTSNKPYTCSQCGQKFSRKQYMTRHISRIHDGIKTARSHVCTQCGKGFYSRGELESHQFHHLGQKPFKCKLCRKEFRWASCLRIHLKRHPKNSDGTFVVIKEDETEDSIDPSSTICNECGKEFNNRRSFKRHKIIHIPKDQRLHYCSICDRKYFREDSFLKHQKLFHGPNSQPIKPSVCDTCGKSVMCLKAHIRRVHSNVKPHKCPQCEERYLYPYHLNLHIHRVHKGVKMDKPFLCNECGKRFHLKTALDAHLIHHLGRNPFKCTVCGKEFRWIGGLRGHMKLHDYNREFNYKCTECNKKFFRAQELVLHKRVHTGERPYSCEICQKSFGSNSTLRKHMKMHKKIEDLGERPYLCKICQKSFTRAGAFTNHMKKERGIIQELFPSTANRILDNATWYENINAIQYMRLARHFRMGSLMNRTSIRERLSSSQGMSCAEFMYQIFQSYDWLYLLDKHNCRFQIGGSDQLGNMKSGHDLIGKLTDKNTYDDALRIISAGGFYINNQRTTNFEEAIVPGIHILPTNTTLVRVGKKNYHIIRWIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -