Basic Information

Insect: Brachynemurus nebulosus
Gene Symbol: -
Assembly: GCA_035578155.1
Location: JAPWDM010000005.1:23681889-23685161[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0082 0.45 12.5 7.1 2 23 110 131 109 131 0.98

2 16 5.6e-07 3e-05 25.6 0.7 3 23 149 169 147 169 0.96

3 16 8.7e-06 0.00048 21.8 0.6 1 23 175 198 175 198 0.97

4 16 2.5 1.4e+02 4.6 1.6 3 23 207 225 206 225 0.87

5 16 0.0013 0.069 15.0 0.3 1 23 233 258 233 258 0.96

6 16 0.15 8 8.5 2.7 3 23 270 290 269 290 0.98

7 16 0.00084 0.046 15.6 3.0 1 23 296 318 296 318 0.98

8 16 0.00011 0.0061 18.3 1.1 1 23 324 346 324 346 0.99

9 16 3.5e-06 0.00019 23.1 0.2 1 21 352 372 352 373 0.96

10 16 9.7e-06 0.00053 21.7 2.9 1 23 452 474 452 474 0.98

11 16 0.065 3.5 9.6 1.4 1 23 480 503 480 503 0.92

12 16 5.6 3.1e+02 3.5 0.8 3 20 512 526 510 530 0.70

13 16 1.6e-06 8.7e-05 24.1 0.9 1 23 536 559 536 559 0.96

14 16 0.00027 0.015 17.1 5.1 1 23 569 591 569 591 0.98

15 16 0.0005 0.027 16.3 5.3 1 23 597 619 597 619 0.99

16 16 3.7e-05 0.002 19.8 2.0 1 23 625 647 625 647 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0082	0.45	12.5	7.1	2	23	110	131	109	131	0.98
2	16	5.6e-07	3e-05	25.6	0.7	3	23	149	169	147	169	0.96
3	16	8.7e-06	0.00048	21.8	0.6	1	23	175	198	175	198	0.97
4	16	2.5	1.4e+02	4.6	1.6	3	23	207	225	206	225	0.87
5	16	0.0013	0.069	15.0	0.3	1	23	233	258	233	258	0.96
6	16	0.15	8	8.5	2.7	3	23	270	290	269	290	0.98
7	16	0.00084	0.046	15.6	3.0	1	23	296	318	296	318	0.98
8	16	0.00011	0.0061	18.3	1.1	1	23	324	346	324	346	0.99
9	16	3.5e-06	0.00019	23.1	0.2	1	21	352	372	352	373	0.96
10	16	9.7e-06	0.00053	21.7	2.9	1	23	452	474	452	474	0.98
11	16	0.065	3.5	9.6	1.4	1	23	480	503	480	503	0.92
12	16	5.6	3.1e+02	3.5	0.8	3	20	512	526	510	530	0.70
13	16	1.6e-06	8.7e-05	24.1	0.9	1	23	536	559	536	559	0.96
14	16	0.00027	0.015	17.1	5.1	1	23	569	591	569	591	0.98
15	16	0.0005	0.027	16.3	5.3	1	23	597	619	597	619	0.99
16	16	3.7e-05	0.002	19.8	2.0	1	23	625	647	625	647	0.98

Sequence Information

Coding Sequence: ATGAACGCTCGAAACATTTTAGATTGTTTATATGCCGGACgggtTGATGGAGAAGACGAGCTTCCTAAATTGATATGTTCAACTTGtgccgaaaaaataattttatgctcCCAATTTAAAAGACAATGTGAAACTAGCGAAAGTATACTTAAATCAGTTTTAGACACTGACACTGTTGACAATGAATACAATATTGTAGACGCATGCGCAAAGGCAACAACCatcaaacaatttaaatatgatTCATCATCAGATCAAGAAAATGATCAGTGTTCATTACCCCCAccaataaaaattgaagaattCGAGGATGaaaaacttcaaaataaatgtttagaatgtggaaaatgttttttgaaaaaacagcATTTAACCAAACATCTTAAATCACATAAAAGAATTAAACGAAAAACTACCAACATCCATGATAAAAGCAATCTCGCGTGTGACATCTGTGGAAAACGTTTTTCACGTAGCGACAATTTGAAATATCATCAACAAAATCATTTTCGTGCGTCACGTTATCCGTGTGACGATTGTGACGcggaatttaaatttaaaagttcaTTGAAAAAACATCGATTAACAGTTCACGGGGGTccaagaaaaaaagaaatttgtaacCTGTGTGGTCGACTGTTCTATCACCTGTACGCTCACATCAAAGTCAAACACAATGACGAAaaggatttaaaatttaaatgcacCGAGGATGGATGCGATAAAAGATTCCCGTACGAAAGTGTACTTAAAACTCACGTTTTAAGAGCGCACCGAGGCGAGAAAATATCACGAATTGATAAACTGTGTACAATTTGTGGCAAAGTTTTGCATTCAGAGAAAGGTTATAAGTATCATATGTTGCATCATTCAGGCGAAAAACCGTATATGTGCGATCATTGTAATATTGGATTTAGatctttatatattttaaaacggCATCAACGCAGACACACTGATGAGCGACCCTACAAATGTACCTACTGCGAGAAAGCGTTCCGATCGAAAAATGTACTATTGGGACATACGAGAATACACACTGGCGAAAAACCGTTTGTTTGTCAAATTTGTAATAAGGCGTTTCGACAAAAAGTAACGCTGACTGCTCACATGAAAgTGGACACTGAAGATATTTTACCAAAGTTAATTTGCTGTGAATGTGCCAAACAAATAGAgcaatgttatttatttaaagttcaATGTGAAGCCAATGAGGAACGTTTAAAACAAATTCAAGAAGATTCTAATAGTGATAACAAATTGACATCTTTGGACATCGAAGAAATGATTTGTAATTCGGACACTGAAAAAATAGAACCTTTAGTAAACGAAAATGTCTCGAAAAATACCCAGTTTGTCTGCCCCACTTGTGGAAAATGTTTTCAAAGAGAAATATATTTGAAACGGCATCAATTAAGACATGAAAATTCCACAAAATTTTCCTGTGGTGAATGTAACCTCACCTTTAACTTTATTCATTTATATCGACAGCACATAACTGATATTCATAATGGTAAAAAACCCAAAGACTTTTGCGAAGAATGTAACAAAAAGGTATCATCGTTATCCGAACATCAAAAGTATTATCACACTAACGAACTACCTTACCAATGTCctgaatgtaataaaaaattccccTACAAGAGCACACTGAATCAACACCTTGAAATTCGTCATGCCGGAGAACGGAATGGGCAAAAACCATTCCAGTGTAATTTTTGTGATAAGAAATTTCGATCGGATAACCATCTGAAACTTCATGAACGCTCGCATACTGATAAACGGCCATATTCGTGTACTTACTGTGAACGGAAATTTCGTAGCACATGTACCCTGAAGGGACATATTCGTACGCACACCGGGGAAAGACCTTTTGTTTGCCATATTTGTGGACGTGCGTTCGCGCAACATACTGCAATGAAGACACATTTGAAAATTCATTaa
Protein Sequence: MNARNILDCLYAGRVDGEDELPKLICSTCAEKIILCSQFKRQCETSESILKSVLDTDTVDNEYNIVDACAKATTIKQFKYDSSSDQENDQCSLPPPIKIEEFEDEKLQNKCLECGKCFLKKQHLTKHLKSHKRIKRKTTNIHDKSNLACDICGKRFSRSDNLKYHQQNHFRASRYPCDDCDAEFKFKSSLKKHRLTVHGGPRKKEICNLCGRLFYHLYAHIKVKHNDEKDLKFKCTEDGCDKRFPYESVLKTHVLRAHRGEKISRIDKLCTICGKVLHSEKGYKYHMLHHSGEKPYMCDHCNIGFRSLYILKRHQRRHTDERPYKCTYCEKAFRSKNVLLGHTRIHTGEKPFVCQICNKAFRQKVTLTAHMKVDTEDILPKLICCECAKQIEQCYLFKVQCEANEERLKQIQEDSNSDNKLTSLDIEEMICNSDTEKIEPLVNENVSKNTQFVCPTCGKCFQREIYLKRHQLRHENSTKFSCGECNLTFNFIHLYRQHITDIHNGKKPKDFCEECNKKVSSLSEHQKYYHTNELPYQCPECNKKFPYKSTLNQHLEIRHAGERNGQKPFQCNFCDKKFRSDNHLKLHERSHTDKRPYSCTYCERKFRSTCTLKGHIRTHTGERPFVCHICGRAFAQHTAMKTHLKIH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -