Bneb008250.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000001.1:164303701-164328381[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.058 3.2 9.8 2.2 6 23 112 130 108 130 0.92 2 14 0.23 13 7.9 4.4 1 23 136 158 136 158 0.95 3 14 0.57 31 6.6 2.0 1 23 169 192 169 192 0.96 4 14 0.001 0.056 15.3 0.5 1 23 198 221 198 221 0.96 5 14 3.8e-05 0.0021 19.8 4.2 1 23 379 402 379 402 0.97 6 14 8.2e-05 0.0044 18.8 1.7 1 23 407 429 407 429 0.98 7 14 0.019 1 11.3 0.9 1 23 431 453 431 453 0.96 8 14 1.7e-06 9.3e-05 24.0 1.0 1 23 459 481 459 481 0.98 9 14 3.5e-06 0.00019 23.0 1.2 3 23 489 509 487 509 0.96 10 14 1.6e-06 8.9e-05 24.1 1.3 1 23 515 537 515 537 0.99 11 14 1.3e-05 0.0007 21.3 0.8 1 23 543 565 543 565 0.94 12 14 2.1e-06 0.00011 23.8 1.0 1 23 571 593 571 593 0.98 13 14 6.2e-07 3.4e-05 25.4 2.1 1 23 599 621 599 621 0.98 14 14 0.00015 0.0081 17.9 2.3 1 23 627 649 627 649 0.98
Sequence Information
- Coding Sequence
- ATGGCCGTCAACCGGTTAAGTATTAGCAatagaaaaactaaaaatagtataaaagcAGCAGAAACTTCAGACGATTACAAAACAGGAAATAATATCGAATATCCGAATAAAATTCAAGATTTGGGTGTAGGCAAAATTAAATTAGATCCAAATAATgaaacagaaattaataatgaatatgACAGTACAAATGACATTAAATCAGAACCTGAAGATGAAAATGTGGTTGATGATAGTAAAAGCAGTAATGAATTAGAAAAAGAAGAAACTTTTTCAGAAGACGAATTCTTTAAAACTagTGAAATAAAACTCAGAGACCTTATTTGCGTTTGCTGCAATAAGAAATTTACTTTAGAATCTAAGTTAAGAGAACATATGAAACAGGTGCATGACAAGGATTACAAATACTTATGTCATATTTGTGGTTATGCAACGGCAAGTCGACAATGTTTCAAGAGTCATAATATGAGACACAAACCAAGAAATACTGAGAATGAGCCAACATATGTCTGTACAAAATGTAATAGAAACTATTTGATAAAATCGCAATTAACATTTCATATGAAAAGAGTACATACGGATATTAGACAATTCGCTTGTGACTTATGTTCGGCACGATTTAAAAGTTATGGTACATTGTTTAAACACATTAATTCAGTACATTcagAACCCGAAGATGAAAATATTAAGGACAATAATGAAGGTAACAACGAAACAGACGAGGAGACATTTTCGGaagatgaattttttaaatttATCACGGAATATGATGAACTACCAAAATTAATCTGTCAAAGATGTATCGatcaagtaaataaaaattatgaatttaaaaagCAATGTCTAGAATCTGAACAACAGTTATTACTCATATTTAGTTCATCCGATGATTTTAAAAACGAGTATGGAGAAGATAAATTTGACGATATTGGAGATGCTGatgttaaaaatgaatattacgAAGATGATAATGATGTAAATAATTATGAGTATTATGAAAGTGATGATACAAAAGATAATATGAAAGTAGACGTGAAAAGAGAACTGGCCGACGACTCTGAAAGTGATCGAATAAATGACAGTAAAAAACGTTCTAGTAAAAGAACACGAATGAAAAGAACAATCGATGACGGTTTTAAATGTGACGAGTGCCATTTAACGTTCAATAAAAAGAGCGGTTTAAATCATCATATTCGATTAGAACATTCAAATCGAAAGTACAAGTGTGATGTATGCGATAAAAGTTTTATACTACTCGGTTGTCTTAAGAATCATCAGTTAAGCCACGGTTTTAATTGTAAAGTTTGTTTAAGAAGTTTTAATAGTGAAAAAGAACTTGATGAACATAAACAGGAGCATAAAAACTTAAATGGTTTCGTTTGTAAAGAATGTGGTAAAGAATTTGCGAAAAAAGTTAAATTGAAATTACATTTAAGAACACATACTGGAGAAAAACCACACTTATGTACAGTTTGCGGTAGAACTTTTGCGTTACAAGGAAATCTCAACACTCACATGCGTATGCACAATGGAGTTAAGCCATACACTTGTCATATATGCAGTAAGGGTTTCGTTCAATGGTCTTCATGGAAAAGTCATATGATAACGCACGAGAATGAGCGAATTTTCGACTGTCCAAAATGTGATAAAAGTTTTACCAGAAAAGCTGTTTTACGAAATCATTTAGCATTTCATTCTGACGTTCGGAAATATTCATGTCCATTTTGtccgaaaaaattcaaaacttcaTCAGAACTTGTAACACATCGCAATATTCATACGGgAGAGAAAAGTTACAGTTGTTCATATTGTAATAAAAGTTTCAATCGTGCGAGCACTTTACGAGTTCATAAACGAATACATACCGGGGAACGTCCACATGTGTGTAAAATTTGTGGACGAGGTTTTATTCAGTTACATGTACTAAATACTCATTTAAAAACGCATCGAGTTCACGAATAA
- Protein Sequence
- MAVNRLSISNRKTKNSIKAAETSDDYKTGNNIEYPNKIQDLGVGKIKLDPNNETEINNEYDSTNDIKSEPEDENVVDDSKSSNELEKEETFSEDEFFKTSEIKLRDLICVCCNKKFTLESKLREHMKQVHDKDYKYLCHICGYATASRQCFKSHNMRHKPRNTENEPTYVCTKCNRNYLIKSQLTFHMKRVHTDIRQFACDLCSARFKSYGTLFKHINSVHSEPEDENIKDNNEGNNETDEETFSEDEFFKFITEYDELPKLICQRCIDQVNKNYEFKKQCLESEQQLLLIFSSSDDFKNEYGEDKFDDIGDADVKNEYYEDDNDVNNYEYYESDDTKDNMKVDVKRELADDSESDRINDSKKRSSKRTRMKRTIDDGFKCDECHLTFNKKSGLNHHIRLEHSNRKYKCDVCDKSFILLGCLKNHQLSHGFNCKVCLRSFNSEKELDEHKQEHKNLNGFVCKECGKEFAKKVKLKLHLRTHTGEKPHLCTVCGRTFALQGNLNTHMRMHNGVKPYTCHICSKGFVQWSSWKSHMITHENERIFDCPKCDKSFTRKAVLRNHLAFHSDVRKYSCPFCPKKFKTSSELVTHRNIHTGEKSYSCSYCNKSFNRASTLRVHKRIHTGERPHVCKICGRGFIQLHVLNTHLKTHRVHE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -