Bneb014849.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000003.1:68941168-68946886[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 9.6e-05 0.0052 18.5 1.2 2 23 198 219 197 219 0.97 2 18 0.00029 0.016 17.0 1.3 1 23 227 249 227 249 0.98 3 18 0.0063 0.34 12.8 3.2 1 23 255 278 255 278 0.96 4 18 0.029 1.6 10.7 1.8 2 23 284 306 283 306 0.92 5 18 0.00011 0.006 18.3 1.6 1 23 311 333 311 333 0.96 6 18 4.2e-05 0.0023 19.7 3.8 1 23 339 362 339 362 0.97 7 18 4.8e-05 0.0026 19.5 5.2 1 23 396 419 396 419 0.96 8 18 0.0019 0.1 14.5 0.1 1 23 428 451 428 451 0.96 9 18 2.3e-05 0.0013 20.5 2.0 1 23 457 480 457 480 0.97 10 18 0.00065 0.035 15.9 6.1 1 23 486 508 486 508 0.97 11 18 0.002 0.11 14.4 1.1 1 23 514 534 514 534 0.97 12 18 0.0013 0.068 15.0 0.9 1 23 540 563 540 563 0.95 13 18 2.2 1.2e+02 4.8 3.2 2 23 573 594 573 594 0.92 14 18 0.00015 0.0084 17.9 2.6 2 23 601 623 600 623 0.96 15 18 0.0036 0.2 13.6 0.6 2 23 630 652 629 652 0.96 16 18 0.009 0.49 12.3 4.3 1 23 658 681 658 681 0.97 17 18 0.0001 0.0055 18.5 0.8 1 23 687 709 687 709 0.98 18 18 0.013 0.7 11.8 0.9 3 23 717 738 715 738 0.94
Sequence Information
- Coding Sequence
- atgaataaacaaattgaatttaaagattttaaaacaatttgtaGAATTTGTTTACTCGATAAAGATGAAATGATCGCATTTTCATCACCACAAATAATGTGTATGATTGAGGAATGCGCTTCCATTCAAgtaatgaaaaatgaaaaattaccgcaaaatatttgtaatgtttGCCATTCCAACTTAAAAATCGCGTacgattttaaaaaacaatgtaTTACGTCTTCCGAAATTCTCTATAAAATTTTGGAACAggaagaaaaaatcaaatataccGAAAAtcacgataaaattttgataaaaactgAATTTGACGCACGGGAAAATACTGACGATAAAAGTGTAAAATATGAATCATTTGATGATCCTGGAGATTGTAACGAATCCAAATTAGAATCGTTAGAATCCACAAGTACTAAAGACGATGATGAAgatagtaaattattttttgaagatGACCCGAAAGTCATATCTGCTGTACCGGCTGAGCATGAagataaattagaaaaatcgTCAGAAAATGAGGAAAATAAAGCGAGACAAAAATCGTTAGCTGAATTACtaataaaaaagtacaaaatctaCGATTTAACATGTAACATATGTAAAAAGGAATTGAGCACACGAACGACTCTGTTACGACACATGGAAACACACAATAAAAATCGCGCGTTAAAATATAAATGCACGTCGTGCAATAAAGCATTCTACGccattgaaaatttgaaaaaacatcaAATCCGACATCTAGGCGGGGCCCGCTTCAAGTGCGACAAATGTACAAAAtgtttttacgtattaagtgcgCTGGGCGTGCACTACAAAAACACCCATAAAATGCCCCCGGTAAAATGCCCGAAATGCTCCATTGAATTCAATCATTCGCTACAATTGCAACAACACAATCAACAAAACCATCAACCGAAACGATTCGTGTGCGATGCCTGCGGTAAAATTTTCACGCACAAATATAAATTGCGCGATCATCAGAGTGCACATTCCGAATTGCGACCGTATTCGTGTTCGCGAtgcgataaaaaatttaaacacaattttgCGTTAACGGCACACATGAAATTGCAACATGTTGAACCGGAACGTCGAGAAATGTGTTTTATTTGCGGTAAATTAATCGTGCCCGGACGATTAACCGTACATATAGAATCGCACGATCAAACCGTCACGCACAAGTGTCATATTTGTGATAAAATTTACCGGAATAAATACGCGTTACGCAGTCACATTAAACAGCGACATTCGAAAAATGccgttattaaaaaatattattgtaaagtGTGTAATAAACCGTTGGGCAGTACCGGCTCGTTGACCAATCATATGGCCATAATGCATTCGGATGTTAAAAAACATGTGTGTTCGATTTGCGGCAAAAGTTATAAGTTACAGTCACACGTTAAAGTCCATATACAAACGGCCCATATGGATGTTCGACCACATATTTGTTCTACGTGCAATAAAGCGTTTCATACGAAGACATTGTTGAATAATCATACGCGCACGCATACCGGGGAACGACCATTTTCATGTTCAGTGTGTGGAAAGGCGTATCCATCACATCTTCAAGCGCATCAAAGCAAACATACGAACGAgaaaccatacgaatgtaacCGATGTAATCGACGCTATAAAACCAAAGGAAGTTTAGATATACATGTAAGTGTAAAGCATGAAGATCCGGAAAAAGTGGAAAAAGCTCAGTGCCATATATGtggaaaaattttacatatctaCCACATTCAAGCACATATCAGCTATAGACATCCGCTAAAAAATCCATTAACATGTGAAAAGTGTGATAAAAAATTCACACATAAAGGTTCCTATTATTCGCATATGGTAACCATACACAGAagcgtaaaattaaaaaagtgcccGTATTGCCCGCGAGAGTTTCGAACGTACTCGGGCCGGATTGGACATATAAACAGGCGTCACAAACAAATTGGCAAGTACAAGTGCACCACTTGTGACGTCAAGTTTCATAAACCGTGCTTGCTTAAAGAACATATGGAAAGAGTGCATTTTAATATTAGACCGCACGAATGTGAACTGTGTGGCGAGGGATTCTAtacgaaaaatgttttaaaaaatcatatgatTACGCACACCGGTGAACGGTCTCATTTATGCACCGTGTGTGGCCAGGCATTCGGGTATTCAAATGTCCTAAAGACgcatattaaattaaaacacgAAAAGGATAAGAAAAAAGATACATAA
- Protein Sequence
- MNKQIEFKDFKTICRICLLDKDEMIAFSSPQIMCMIEECASIQVMKNEKLPQNICNVCHSNLKIAYDFKKQCITSSEILYKILEQEEKIKYTENHDKILIKTEFDARENTDDKSVKYESFDDPGDCNESKLESLESTSTKDDDEDSKLFFEDDPKVISAVPAEHEDKLEKSSENEENKARQKSLAELLIKKYKIYDLTCNICKKELSTRTTLLRHMETHNKNRALKYKCTSCNKAFYAIENLKKHQIRHLGGARFKCDKCTKCFYVLSALGVHYKNTHKMPPVKCPKCSIEFNHSLQLQQHNQQNHQPKRFVCDACGKIFTHKYKLRDHQSAHSELRPYSCSRCDKKFKHNFALTAHMKLQHVEPERREMCFICGKLIVPGRLTVHIESHDQTVTHKCHICDKIYRNKYALRSHIKQRHSKNAVIKKYYCKVCNKPLGSTGSLTNHMAIMHSDVKKHVCSICGKSYKLQSHVKVHIQTAHMDVRPHICSTCNKAFHTKTLLNNHTRTHTGERPFSCSVCGKAYPSHLQAHQSKHTNEKPYECNRCNRRYKTKGSLDIHVSVKHEDPEKVEKAQCHICGKILHIYHIQAHISYRHPLKNPLTCEKCDKKFTHKGSYYSHMVTIHRSVKLKKCPYCPREFRTYSGRIGHINRRHKQIGKYKCTTCDVKFHKPCLLKEHMERVHFNIRPHECELCGEGFYTKNVLKNHMITHTGERSHLCTVCGQAFGYSNVLKTHIKLKHEKDKKKDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -