Bneb011487.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000002.1:36943066-36949435[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 9.7e-06 0.00053 21.7 2.6 1 23 30 52 30 52 0.99 2 14 0.00042 0.023 16.5 0.4 1 23 59 82 59 82 0.98 3 14 0.00016 0.0087 17.8 1.9 1 23 87 109 87 109 0.96 4 14 1.9e-05 0.0011 20.7 3.4 1 23 115 137 115 137 0.98 5 14 3.5e-06 0.00019 23.1 2.9 1 23 143 165 143 165 0.98 6 14 0.0014 0.075 14.9 3.0 2 23 290 312 289 312 0.95 7 14 0.0058 0.32 12.9 2.0 1 23 319 342 319 342 0.92 8 14 9.9e-07 5.4e-05 24.8 1.8 2 23 349 371 348 371 0.95 9 14 0.00012 0.0067 18.2 1.8 1 23 376 398 376 398 0.98 10 14 0.024 1.3 11.0 2.8 1 23 405 428 405 428 0.98 11 14 4.1e-05 0.0022 19.7 0.5 3 23 436 456 434 456 0.95 12 14 4.3e-06 0.00023 22.8 1.7 1 23 462 484 462 484 0.98 13 14 1.2e-05 0.00065 21.4 6.2 1 23 490 512 490 512 0.98 14 14 0.00016 0.0087 17.8 2.0 1 23 518 540 518 541 0.96
Sequence Information
- Coding Sequence
- ATGGAATTCACTCGTTTTCTGTTAATGAACAAGGTAGCTACTAGTGAATTGAAAAATCACATCCAAAAAGACCACGAAAATATCACGTATACGTGcgacatctgtaaaaaaacatacaaaggACGAGATTATCTTCGACGACATAAGCGAATACATGATCCCACATCTGTTCGATTTACATGCCCCATTTGTCAGGCAGGTTGCACCGAACCTAGTTTTTTAAAGGCGCACATAAAACGAATACATGATAAACGAACATATATCTGTGACAAATGTGGAAAACATTTCGCGCAACCAGAATGTCTTAAAATGCATGCCACAATCCATGATAACGTTAAAAATCATCAGTGTAATTACTGTGAAAAAACATttcgtaataaaatattacttgatACGCATGTGCGTACACACACCGGTGAAAAGCCGTTTCAGTGCAATCAGTGTGATAGACGTTTCACCCAACGGACCAGCCTAACGATACATTTGCGATATCATAGCGGTGAACGACCAAACCCAAcagtttacgtaaaaaatgaATATACTCGTACAGAAGTAAAAACCTATGAGGATATTATTAAGGACGAAGATAAAAAAACCAACGTAATATTAGATAATTCTAATATTGAATCAAAAACACAAACGTATAATACGGCAAGTGATGACGAAGATGAATTACTCTACATAAATGGTGAATGGCACTACTTCAACCCTAAAATGGAAACGTCCCAACAGAAACCTCCCCCAGACTATGAAATAGTCCTTGTGAATGGTGTAGCACTTTATAAATGTAAATGTTGTAATGAGATACGTGGAACCAAAGAACAATGGCGTCGGCATCATTATCGACGAACAGTTCCAAATACAATCCCCTGCGACATgtgcaataaaaaattcaaatttaattgtgACCTCCGTCAACATAAACAATCGGCACACAATCCGTCACAAGCCGAATTTCTTTGTGAACTGTGCAATAAAACTTACAGTACAAAATACACCTTAACATTTCACATTGAGAgacgccatttaaaaaaaaattacctaaaatgtaatttatgtgacaaaacattttataataaatcgAATTTACAGAAACATGTCAGTAAAGTCCATGAAAAAGCCACCTACCCGTGTGAAAATTGTCAGAAAGTTTGTAAAACGCTTGATGCGTTTAAAGTACATCAGCGACTGCACGATCcgacatttaaaaaattcacttgTAGTGTTTGTGACGCCAGCTACTTGGAGCGACactctttaaaaaaacatataaaacgAAAACATACACCAACTGTGCCAATTATTTGTGATAAATGTGGAAAAAGTTTCGGATATCAACACGCTCTCAATCGTCATGCATCAGTTCATGATAACGTTAAAAATTATTCGTGTAATATCTGTGAGAAAAAATTTCGCAACAAAATATTACTTCGTACGCATGTACGTTCACACACTGGTGAAAAACCGTTTCAGTGCAACCAGTGTGAAAAGAGTTTTACACAACGGTGTAGTTTAACGAGACATTTGCGATACCATAGCGGTGAACGACCATATGAATGTGATCTGTGCGATAAGCGTTTCGTTACACGAGCTGTCTTAAATGAGCATAAGAAAAAGCATCATCAAGTAGCAAATtga
- Protein Sequence
- MEFTRFLLMNKVATSELKNHIQKDHENITYTCDICKKTYKGRDYLRRHKRIHDPTSVRFTCPICQAGCTEPSFLKAHIKRIHDKRTYICDKCGKHFAQPECLKMHATIHDNVKNHQCNYCEKTFRNKILLDTHVRTHTGEKPFQCNQCDRRFTQRTSLTIHLRYHSGERPNPTVYVKNEYTRTEVKTYEDIIKDEDKKTNVILDNSNIESKTQTYNTASDDEDELLYINGEWHYFNPKMETSQQKPPPDYEIVLVNGVALYKCKCCNEIRGTKEQWRRHHYRRTVPNTIPCDMCNKKFKFNCDLRQHKQSAHNPSQAEFLCELCNKTYSTKYTLTFHIERRHLKKNYLKCNLCDKTFYNKSNLQKHVSKVHEKATYPCENCQKVCKTLDAFKVHQRLHDPTFKKFTCSVCDASYLERHSLKKHIKRKHTPTVPIICDKCGKSFGYQHALNRHASVHDNVKNYSCNICEKKFRNKILLRTHVRSHTGEKPFQCNQCEKSFTQRCSLTRHLRYHSGERPYECDLCDKRFVTRAVLNEHKKKHHQVAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -