Bneb014839.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000003.1:68861709-68866422[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.099 5.4 9.1 8.1 1 23 113 136 113 136 0.98 2 25 0.018 0.99 11.4 1.6 2 23 140 161 139 161 0.90 3 25 2.4 1.3e+02 4.7 0.1 2 23 169 189 168 189 0.91 4 25 0.003 0.16 13.8 0.8 2 23 197 219 196 219 0.97 5 25 0.0056 0.3 13.0 0.7 3 20 230 247 228 250 0.88 6 25 0.2 11 8.1 2.5 1 19 256 274 256 278 0.76 7 25 0.013 0.7 11.8 1.7 1 23 284 307 284 307 0.94 8 25 0.15 7.9 8.5 0.2 2 23 318 338 317 338 0.96 9 25 0.00096 0.052 15.4 1.6 2 23 346 368 345 368 0.97 10 25 3.2e-05 0.0017 20.0 0.4 2 23 376 398 375 398 0.97 11 25 0.00086 0.047 15.5 4.2 1 23 404 426 404 426 0.96 12 25 0.0017 0.092 14.6 3.1 1 23 432 455 432 455 0.94 13 25 0.014 0.74 11.8 7.8 1 23 562 585 562 585 0.98 14 25 4.3e-05 0.0024 19.6 3.1 2 23 589 610 588 610 0.93 15 25 6.7e-05 0.0036 19.0 0.1 1 23 616 639 616 639 0.96 16 25 2.1 1.1e+02 4.9 1.8 2 23 647 667 646 667 0.84 17 25 0.0027 0.15 14.0 2.1 2 23 675 697 674 697 0.97 18 25 0.0044 0.24 13.3 1.0 3 23 708 728 706 728 0.91 19 25 0.0037 0.2 13.5 1.8 1 23 734 757 734 757 0.97 20 25 0.32 18 7.4 0.4 3 23 769 788 768 788 0.96 21 25 0.029 1.6 10.7 3.3 2 23 796 818 795 818 0.97 22 25 7 3.8e+02 3.2 2.4 3 23 829 849 827 849 0.93 23 25 2.5e-05 0.0014 20.4 2.1 1 23 855 878 855 878 0.98 24 25 0.00066 0.036 15.9 1.3 1 23 884 906 884 906 0.96 25 25 3.7e-05 0.002 19.8 0.9 1 23 912 935 912 935 0.95
Sequence Information
- Coding Sequence
- atGATGTCTGCGTGTACGTCAGTACAAATCTGGTTAAACGATGACTTACCAAATCACATATGTAATACGTGTTTCATTGATCTCAAAAATTCATTCAACTTTAAACAACTTTCGGAAAACTCGGATAGTATTTTACGAAATATTGTCCATAAGCACAATTTAGGCAATAAATTGGTTGATAAAACCGAGACACTAGACGAGAAAGATTTTGATGATAATTTCATCGATTCAGTCAAATATGAATTCGAATCTGATTgcgaaacaaaaattaaagacgAATATGAGGATACCAAAATTCTTATTACAGatgacacaaaaaatatatgtgaaaaACAGTACAAGTGCGAGCAGTGCCATCTGAAATTCTCTCATTTACGCCATCAAGAATTACATATGAATAGGCAACACAAATTGAAGAAATGTaatatttgcaataaaacaTTCAAAACCGACGCATTACGAATTCATAAAAATCTAACACATTCCACGAAAGATAATCGGGTCCCGTGCAACGTGTGCGGTAAACCTATCCTCAAGGGACAGATTCAACGCCATCTAACAATTCACAAAAACAATCGGGACCCGGTACAGTGCGATAAAtgtgaaaagaaatttttatatgcgaGTTCACTGAAGCTGCACATTAAACGCGATCACGAAAAAATCGCACGCGAATTGAAACATTTGTGCGACACGTGCGGTAAAAAGTACTCATCACGAATTGCTCTAGAGCGACACAGTGTCGCACATAAACCCGATCGTCCGTATCAGTGTACGCAGTGCGATAAAAGTTTTAAACTTGATTGTATTCTAAAAAAACACAGTGTCGTACATAAATCCGACCGTCCGTATCAGTGTACACAGTGCGATAAAAGTTTTAAACTTGATTTTATTCTCACAAAACACGTACGAAACATGCACGCATCCACCGCTAACACGCATATACGGGTCCCGTGTAACGTATGCGGCaaacaaatatcaaaaataaatatgcaaacacatttaaaaatacatcagGACGTTCGAGATCCGATCCAGTGTGATATGtgtgaaaaaaaattcctaagCAAGAATTCGTTGAAAAGGCACATTAAACGCGATCACGAAAAAATCGGAAACATCTTGAAATGCGATAAATGTGATATGAAATATAAATCTCCATCCGGATTGACACAGCACATTCAAACGGTCCACCTAAACATAAAACCGCACGCTTGTACCGTTTGTGGCCAACATTTTGCAATGAAATCCACGCTGGCCAGTCACATGCATACACACACTGGCGAACGTCCGTTTCAGTGTATATTTTGCGAGAAGTCGTACAGTCAGCAATCATCGCTACGGACGCACATAAAACATATTCATGCTGATCGTATCTGGTTAAACGATGACTTACCAAATCACATATGTAATACGTGTTTTATTGATCTCAAAAATTCTTTCAACTTTAAACAACTTTCGGAAAACTCGGATAGTATTTTACGAAATATTGTCCACAAGCACAATTTAGGCAATAAATTGGTTGATAAAACCGATACACGAGACGAGAAAGATTTTGATGATAATTTCATCGATTCAGTCAAATATGAATTTGAGTCCGATTgcgaaacaaaaattaaagacgAATATGAGGAAACTAAAATTCTTATTACAGatgatacaaaaaatatatgcgAAAAACAGTACAAATGCGAGCAGTGCCATCTGAAATTCTCTCATTTGCGCCATCTAGGATTACATATGAAAAGGCAACACAAATTGAAGAAATGTAATATTTGCCATAAAACATTCAAAACTCCTAGCAAATTGATGCGTCACAGTGTAATTCATGGGCACGAACGACCGTATCAGTGTCCGCAATGCGGTAAAACGTTTAAATTAGACGCCGCATTACGAGTTCATCGAAATCTAGCACATTCCACAAAAGACGATCGGGTACCTTGTGACGTGTGCGGTAAACATGTCCTCAAACGACACATTCAACGCCATCTAACAATTCACAAAAATGATCGAGACCCGATACAGTGTGACAAGTGTGAAAAGAAATTCTTACATGCGAGTTCACTGAAGCTGCACATTAAACGCGATCACGAAAAAATCGCACGCGAATTAAATCATCTGTGTAACACGTGCGGTAAAAAGTACGCATCACGAATTTCTCTGGAGCGACACAGTGTCGTACATAAACCCGACCGTCCGTATCAGTGTACGCAGTGCGATAAAAGTTTTAAACTTGATTTTATCCTCACAAAACATGTACGAACCATGCACGCATCCACCGCTAACACGCATATACGGGCCCCGTGTAACGTATGCGgtaaactaatatcaaaaacaaatatgcaaacacatttaaaaatacatcgGGACGATCGTGCCCTCATCAAATGCGACAAATGTTCGAAACAATTTCTACATCAGTTATCACTCAAGCAACATATTCGTCGCGAACACGAAAATGTCGCGCGCGATTTAAAACACTTGTGTAGCGTATGTGGTAAGGGGGCTGGTTGTCGCGCGGAACTTCAGGAACACATGCATTCGCACAGTGAcgagaaaaatttcaaatgcgATAAGTGTGGTATGAAATATAAATCGCGAGCCGGACTTACGCATCACATTAAAACGgctcatttaaatataaaaccgCATGCTTGTACGATGTGTGCGCAACGTTTTGCATTGAAATCTACGCTGGCGAGTCATATGCGTACGCATACTGGCGAACGTCCGTTTCAGTGTATAGTTTGCGAAAAGTCATTCAGTCAAAAGTCATCTCTTCGCACCCATATAAAACTTGTTCATTCGGATTGA
- Protein Sequence
- MMSACTSVQIWLNDDLPNHICNTCFIDLKNSFNFKQLSENSDSILRNIVHKHNLGNKLVDKTETLDEKDFDDNFIDSVKYEFESDCETKIKDEYEDTKILITDDTKNICEKQYKCEQCHLKFSHLRHQELHMNRQHKLKKCNICNKTFKTDALRIHKNLTHSTKDNRVPCNVCGKPILKGQIQRHLTIHKNNRDPVQCDKCEKKFLYASSLKLHIKRDHEKIARELKHLCDTCGKKYSSRIALERHSVAHKPDRPYQCTQCDKSFKLDCILKKHSVVHKSDRPYQCTQCDKSFKLDFILTKHVRNMHASTANTHIRVPCNVCGKQISKINMQTHLKIHQDVRDPIQCDMCEKKFLSKNSLKRHIKRDHEKIGNILKCDKCDMKYKSPSGLTQHIQTVHLNIKPHACTVCGQHFAMKSTLASHMHTHTGERPFQCIFCEKSYSQQSSLRTHIKHIHADRIWLNDDLPNHICNTCFIDLKNSFNFKQLSENSDSILRNIVHKHNLGNKLVDKTDTRDEKDFDDNFIDSVKYEFESDCETKIKDEYEETKILITDDTKNICEKQYKCEQCHLKFSHLRHLGLHMKRQHKLKKCNICHKTFKTPSKLMRHSVIHGHERPYQCPQCGKTFKLDAALRVHRNLAHSTKDDRVPCDVCGKHVLKRHIQRHLTIHKNDRDPIQCDKCEKKFLHASSLKLHIKRDHEKIARELNHLCNTCGKKYASRISLERHSVVHKPDRPYQCTQCDKSFKLDFILTKHVRTMHASTANTHIRAPCNVCGKLISKTNMQTHLKIHRDDRALIKCDKCSKQFLHQLSLKQHIRREHENVARDLKHLCSVCGKGAGCRAELQEHMHSHSDEKNFKCDKCGMKYKSRAGLTHHIKTAHLNIKPHACTMCAQRFALKSTLASHMRTHTGERPFQCIVCEKSFSQKSSLRTHIKLVHSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -