Bneb013227.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Brachynemurus nebulosus
Gene Symbol
-
Assembly
GCA_035578155.1
Location
JAPWDM010000003.1:13743509-13747823[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 0.053 2.9 9.9 0.3 2 20 215 233 214 235 0.93
2 26 0.0014 0.076 14.9 0.6 1 23 241 264 241 264 0.97
3 26 0.015 0.84 11.6 0.3 1 23 272 294 272 294 0.95
4 26 0.26 14 7.7 0.7 1 23 312 334 312 334 0.91
5 26 0.001 0.056 15.3 0.2 1 20 340 359 340 361 0.96
6 26 0.001 0.055 15.3 4.9 1 23 400 422 400 422 0.98
7 26 1.4 75 5.5 3.3 1 23 427 449 427 449 0.94
8 26 0.022 1.2 11.1 0.9 3 23 455 473 454 474 0.95
9 26 9.9e-05 0.0054 18.5 1.3 1 23 480 502 480 502 0.98
10 26 9.3e-05 0.0051 18.6 0.3 1 23 508 530 508 530 0.99
11 26 0.0079 0.43 12.5 2.8 1 23 536 560 536 560 0.96
12 26 0.00042 0.023 16.5 0.9 1 23 566 588 566 588 0.97
13 26 0.00029 0.016 17.0 4.7 1 20 594 613 594 615 0.94
14 26 0.0002 0.011 17.5 1.5 1 23 880 903 880 903 0.93
15 26 0.067 3.7 9.6 0.2 2 23 912 933 911 933 0.94
16 26 2.6 1.4e+02 4.6 2.2 3 19 952 968 950 972 0.86
17 26 0.00019 0.01 17.6 3.8 1 23 978 1000 978 1000 0.99
18 26 1.2 64 5.7 0.5 1 23 1005 1028 1005 1028 0.92
19 26 0.0051 0.28 13.1 0.9 1 23 1037 1059 1037 1059 0.98
20 26 0.36 20 7.3 3.8 1 23 1064 1086 1064 1086 0.97
21 26 0.00012 0.0064 18.3 0.9 3 23 1092 1113 1091 1113 0.98
22 26 8.5e-05 0.0046 18.7 1.5 2 23 1120 1141 1119 1141 0.97
23 26 0.026 1.4 10.9 0.3 1 23 1147 1169 1147 1169 0.98
24 26 0.00075 0.041 15.7 2.1 1 23 1175 1199 1175 1199 0.96
25 26 0.0011 0.057 15.3 0.4 1 23 1205 1227 1205 1227 0.98
26 26 0.0032 0.17 13.7 6.1 1 23 1233 1256 1233 1256 0.96

Sequence Information

Coding Sequence
ATGGACCCGAATGTAATATACTCAACGTTGGAAATAAAACAGATGTGtcgtatttgtttaaaaatgtcgCCAAATAAGTCTTCAATTTGGGATGCAGTATCTGTAAATGATATAGGTAACATTCAATTTGTAAAAATGATTATGGAGTGTACTTCGGTTATTgtcGAAAAAGATGATGGTTTTCCAGAGTATATTTGTTCCGAGTGCTCCCAGCAATTGACAATTTCATACTGTTTTAAACGTCGTTGTGAAAAATCCAATGCGAATTTggaacaaatttttgaaattttgaaagcaTCTGGTGCAAGTTGtgattatattttaattgcTAATTCTAGTAAACTATCAAacgaaaaagttaaaaatgacaTACTTATAAAAAGTCAAGAAAATGATTTAGAAATTAACGAAACAATAATACAACGTGGAGACGAGTTAATAGATGAAAAAGTAAtcctgaaaattgaaaatttaaatgaagTTGACGAATATTGTTTGGATACAAATGATGCAGAAGATGTTACCCTAGACACGACAGTCGATATTAAGCCAGAATCAAATGAAGATGTTCCTAGAaacgttattaaaaataaatcgaagtTAAATAATTGTGCGTCACTTGACAATTCTTCATCGGCTCTCGTTTGCCCTTATTGTTtaaagcaattaaaaaacaaaaggaaTCTCACTCTACACAAATATGTTTGTAAAAAAGCCACTTTCAACTGTGAtcagtgtttaaaaaattttcccagtCAGTCCCTGCTTAGTATACATTTATCAACTTCACATAGAGAAATTCTTACGTTGCTCTACATTTGTGATATCtgcaatgataattttaacgACAAATCATCATTAATCGAACATTTTTACATTCATATCGAAACCTCGTTACACATTAATTATGATTTCGATGATAAATGTGAGacatatatatgttatagttgcGACAAAATGTTTTCTTCAATGAAACCATTTGTTAAACATGGCAGTGAACACAGTCAAAATAAAGATTATCGTTGTCGAAAGTGTGACAAAGCGTTCGAGGGATACGATCtcttaaaaaaacatataattGATGCGTATGGAATTCTGCCATACTTTTGTGGtaaatgttttttaagttttgaaaacaTAAATAAAGTGAATGTACACTGTATGTCTCAACATCATAGTCCAATGTTGAAAGATACTTTTAAATGTTCACTCTGTGAAAagatttttaagaatttatttcagTTGAAAAGTCATTTGAAACATCATAAAGCCgatttatataaatgtttagtTTGTTTCAAATCCTGCAACTCAATTGTTGAGTTTAACAATCATAAAACGGATCATAACGTCTCCAAATTGTGTCCCATATGTGGGAAACAATTCCCGCGAACTTTACGCTCTCACATTCAAGTACAtcacaaaaaagtgaaacagtTCACCTGTGACGTGTGTAATAAAACCTACCGTTCACTAACAGGCTTGACAAGTCACAAACGAATTCACACTAATGAAAGACCCTACGTTTGTACCTATTGTCCATACCGTGCAAGACAACCGACCGACTTAACGGTACATATTCGTAGACATACCGGTGAGAAACCGTATGTTTGTACATTTCCAAATTGTGGTCAAAGATTTAAGACGTCCAGCCATCGAAATGTCCATTATCTACAACATACGGGTGAACGCAACCATGAATGCCAAATATGTAAAATGAATTTCGTGAAGGCATCAGATGTACGAAGACATATGTTAATACATTCGGATAAAAGGGAGCATAAATGTGATATTTGTGACAAAGAATTTCGACGTAAACATCATTTAACAGTTCATAAATTTAGCGGACAAAGAGAATATCGAGAATATCTCTATTATACTGTATGGAAACCTGGTGTATTTTATCTGTGGTTTGGGAAATACGTAAATGCCGTTGTTCTAAAGAATATGGAGCCGAGCATAATATACTCAACGTTAGAAGTTAAAAAACTTTGCCGTGTTTGCCTAAGAATATCGCCAAATAAGTCTTCAATTTGGGATAcagtatttgtaaataatataggTAACATTCAATTTGTAGGAATGATTATGGAGTGTACTTCGGTTATTgtgGAAAAAGGTGATGGTTTTCCGGAATACATTTGTTTCGATTGCTCCCAACAATTGGCAAATGCATACTGTTTTAAACAGCGTTGCGAgaaatcaaattcaaattttaaacaaatttttgaaattttaagagCATCGAGTAAAAGTTGtgattatattttaattgcAAATTCTGGTAAATTGCCatgcataaaaattaaaaatgaaacattttcaaaaaatcaagaaaatgaCTTAGAAATCACCAAAAACATCATAGAAAATGAAGAATCGTTAACagaagaaaaacaaattatacCTATTAAAGTTGAAGAATATTATTTGGATACAAATGATGCAGATGTTACACTAGAATCGAAAGTAGATATTATGCCCGAATCAGATGAAGACATTTCTGGAATTGCTATTAAGAATGAATCCGAGTCAGGTGAAGATTCTTTATCGGCCGCTACTTATTCTAATTGTCTGAAAAAACTTAAACACAAGAAAAGCTTTAGTTTACACAAATATTCCTGTAAAAGAACCACTTTCAGTTGTAATCAATGTCCTAAAAATTTTCGCAACCAGTTCCTACTCCGTACACATTTATCAGCTTCCCATGGTGAAGTACCTACGTCGCTATTGACTTGTGATATCtgcaatgataattttaaggACGAATCCTCATTAATCGAACATTTTTACATTCATATCAAAAACTCATTAGACTTTAATGATTTCGATGATAAATGCGAGACATATTTATGTTATCCTTGTGATAAGAATTTTTCTTCAaccgaaaaattaattaaacattgTAGCGAACACAGTCAGGGTAAagattatcgatgtcgaaagtGTAACGAAACCTTCGAAGAATAcaagttattaaaaaaacacaTGAGAAAACATGAGATTCAACCATACTTTTGTGATAAATGTCTTTTAAGTTTTAATACGATAAATCAAGTGAAAATACACGAAGAAGTTAAACATCGAGCGTCAGTGGTCAAAGATACTTTTAAATGTCCACTCTGTGAAgacatttttaagaatttattccAATTGAAAAGTCATTTGAAAGAGCATAAAGCtgatttatataaatgtttagtTTGCTTTAAATCCTGCAACTCAATTGTTGagtttaaaaatcataaaaagggACATAATGTGTGCAATTTATGTCCCAATTGTGGAAAACAATTCCCTCGGGCTCAGTCTTTGTACACTCATATTCGAGTATGTCACATGAAGATGACTCAAGTCACGTGTGACGTATGTAACAAAACATATAGTACAACACAAAGTTTAAAGGTTCACAAACGAACGCATACCAAAGAAAAACCGTACATTTGCTCGTACTGTCCATACCGTGCAGGACATGTAGGTGACTTGATAAAACATGTACGCAGACATACCGGTGAAGCCCCGTATGCTTGTAAATTTCCAATTTGTGGTCAAAGATTTAAAACGGCCAGCCATCGAAATGAACATCAACGACAACATACGGGTGAACGCAATTATGAAtgcaaaatatgtaaattgaaaTTCGGCAAATCGGGAGTTCTTCGGAATCATATGTTAATACATTCGAATAAAAAGGAACATAAATGTGGTATTTGTGCCAAAGAATTTCGACGTAAACATCATTTAACAGTTCATAAATTGAAAGTTCATGGTATACCAAAAgacaaatgtaataaaatttaa
Protein Sequence
MDPNVIYSTLEIKQMCRICLKMSPNKSSIWDAVSVNDIGNIQFVKMIMECTSVIVEKDDGFPEYICSECSQQLTISYCFKRRCEKSNANLEQIFEILKASGASCDYILIANSSKLSNEKVKNDILIKSQENDLEINETIIQRGDELIDEKVILKIENLNEVDEYCLDTNDAEDVTLDTTVDIKPESNEDVPRNVIKNKSKLNNCASLDNSSSALVCPYCLKQLKNKRNLTLHKYVCKKATFNCDQCLKNFPSQSLLSIHLSTSHREILTLLYICDICNDNFNDKSSLIEHFYIHIETSLHINYDFDDKCETYICYSCDKMFSSMKPFVKHGSEHSQNKDYRCRKCDKAFEGYDLLKKHIIDAYGILPYFCGKCFLSFENINKVNVHCMSQHHSPMLKDTFKCSLCEKIFKNLFQLKSHLKHHKADLYKCLVCFKSCNSIVEFNNHKTDHNVSKLCPICGKQFPRTLRSHIQVHHKKVKQFTCDVCNKTYRSLTGLTSHKRIHTNERPYVCTYCPYRARQPTDLTVHIRRHTGEKPYVCTFPNCGQRFKTSSHRNVHYLQHTGERNHECQICKMNFVKASDVRRHMLIHSDKREHKCDICDKEFRRKHHLTVHKFSGQREYREYLYYTVWKPGVFYLWFGKYVNAVVLKNMEPSIIYSTLEVKKLCRVCLRISPNKSSIWDTVFVNNIGNIQFVGMIMECTSVIVEKGDGFPEYICFDCSQQLANAYCFKQRCEKSNSNFKQIFEILRASSKSCDYILIANSGKLPCIKIKNETFSKNQENDLEITKNIIENEESLTEEKQIIPIKVEEYYLDTNDADVTLESKVDIMPESDEDISGIAIKNESESGEDSLSAATYSNCLKKLKHKKSFSLHKYSCKRTTFSCNQCPKNFRNQFLLRTHLSASHGEVPTSLLTCDICNDNFKDESSLIEHFYIHIKNSLDFNDFDDKCETYLCYPCDKNFSSTEKLIKHCSEHSQGKDYRCRKCNETFEEYKLLKKHMRKHEIQPYFCDKCLLSFNTINQVKIHEEVKHRASVVKDTFKCPLCEDIFKNLFQLKSHLKEHKADLYKCLVCFKSCNSIVEFKNHKKGHNVCNLCPNCGKQFPRAQSLYTHIRVCHMKMTQVTCDVCNKTYSTTQSLKVHKRTHTKEKPYICSYCPYRAGHVGDLIKHVRRHTGEAPYACKFPICGQRFKTASHRNEHQRQHTGERNYECKICKLKFGKSGVLRNHMLIHSNKKEHKCGICAKEFRRKHHLTVHKLKVHGIPKDKCNKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-