Bneb013945.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000003.1:36527076-36541126[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00019 0.01 17.6 1.4 2 23 157 178 157 178 0.98 2 15 0.0011 0.058 15.2 1.5 1 23 186 208 186 209 0.93 3 15 0.00075 0.041 15.7 2.5 1 23 271 293 271 293 0.98 4 15 0.077 4.2 9.4 4.0 2 23 300 321 299 321 0.97 5 15 7.1e-05 0.0039 18.9 4.1 2 23 342 364 341 364 0.97 6 15 9.7e-05 0.0053 18.5 7.0 1 23 424 446 424 446 0.97 7 15 0.06 3.2 9.7 6.2 1 23 452 474 452 475 0.95 8 15 0.0014 0.074 14.9 1.1 1 23 480 503 480 503 0.97 9 15 2.1e-05 0.0012 20.6 0.9 1 23 511 533 511 533 0.98 10 15 8e-07 4.4e-05 25.1 1.5 1 23 540 562 540 562 0.97 11 15 7e-05 0.0038 19.0 1.6 3 23 574 594 572 594 0.92 12 15 0.00054 0.029 16.2 3.5 1 23 600 622 600 622 0.98 13 15 2.6e-05 0.0014 20.3 1.5 1 23 628 650 628 650 0.96 14 15 5.2e-07 2.8e-05 25.7 0.3 1 23 656 678 656 678 0.99 15 15 0.00054 0.029 16.2 0.1 1 23 684 708 684 708 0.92
Sequence Information
- Coding Sequence
- ATGGATGAAATGGAGAAAACCAAAGCACcttttttaatggataaaatATGTCGTTCCTGTATGAATGAAAGTAATGAAATGCAATCATTATTTACTAGAATGGAAATGGCGGGTCTGGAAACACAAGTATCGGAAATGTTGATGGCTTGTGCTTCAGTACAagtAGCTTCTGGTGACGGTTTACCTGATTCAATCTGTAGACCGTGTGTACATCAGTTAAGTAACGCATACACATTCAAGCAACAATGCGAAAGTACAGACATAAAATTGCGTCAGTACATCAGTACATTAACGGAAGAGTTGAAAATCAAAGAGGAAAAAAACGAGGCAGATTCGTTCAGTATTGTCGTAAAACCCGACATCGATATGGGCGTAATGGATGATATTTACGACGATAATAATTTCCAAAATGATTGGAATGATTCAGATgacgaaaaattgaaaaaaatatcaaagaaaAGTCCAAACGaatgtaaaatttgtttcaaaaaagtaTCAACGAAAGGTGGCCTTAAATTACACATGCGAAAACACGAAAAAGAGAAAAATGATAAACATATTTGTGAAATGTGCGGGATAGCTTTTGATAAATTAGGTCAATTGAAAAAACACAGACTAGAACACCACCCCAATGGCGATGGcggagaaaaaaatcaaattttaggcaatgataaaattttaaactcaaTAAAGAATGAAGAATTGAAAGAGGAAGTTTTGGAAGAAGATGATGACGATCGAAACGATCCCGATTTTGAAATTGAAGTTAATAAAAGTCGTTCGACCAAAAAACGTGACGATTTGGGTGAATATGAATGTAACGAATGCCATAAGGTTTTATCAAGTTACAAGGGCTTACAAATTCATAAGAAACGACACACAGGCGAAGGCTTAAATCAGtgttatTTatgtgtaaaaacatttttaaaattcagcCATTTAAAACGGCATTTATTAACGCATGGACTGTCCACTTCCGCTATTGaggaaattaaaaatgaaaataaaggtAAAATGTTCTTACAATGTGAATACTGTGACCGAAAATTTGTGTACCGAAAAAGTTTTACACATCATATGAAAACGGAACACGCAATATCTGAAGAAGAGGCACAACTGCACGGTGaacttattattaaaaatgaagaaatattaaaagacgaaaataatgaaaataatggcCATTTACCAGATGATACAGatatgAATTTAGAGGAACAAAATGAATTGGTCGATCAAGAAAATGAAGAAGAGGAAGACGGACAGGAGTATGAATGTCACGTGTGTAATCACAAATTCTCCAGAGCGAACCATTTAACGCGTCATATGACACTGCACAGAAATGTGCTAACGCACAAATGTGATCACTGCGAGAAGGCTTATTTAACTGAAGAGCATTTGCAGAAACATATTGAGGAACATCATGTTCAAAAGTCATATTTTTGCACACTGTGCAATATTCCATTTATGCGTGGTGAACATTTAATACGTCACTTAAAAACGGAACATATACCGGAAGAGATTAGCGAATTTAAATGTTCCGTTTGCGACAAAGTGTTCAACACGGGCAGTCTATTGGCCAAACACACCAAACAACACTTAATGAAGGACAAGAAGCATATTTGTGATGTGTGCAACAAGGCGTTCAGTAGGTTAGATAATTTGAAAACGCATCAGCGAATTCATAGCAGAATTAAAGATCCTGTGCGTTTACATCTCTGCATCTATTGTGGAAAGGAATTTAACAATTCTAGCAATATGaTTGTGCACATGCGTCGACATACTGGTGAACGCCCGTACAAGTGTCAAGTATGTGGAAAAGGATTTCCGAGGTCCCACGATCTTAAATGCCATGAGAGAATACATTCCGGCGAACGTCCATACTTATGCACCCTTTGCGGCAAatcatttaataaaagtaataaattggTCCGTCACACTCGTGTACACACCGGTGAACGGCCGTACGTTTGCAATTTATGCGGCCGTGCGTTCACTCAATCAAATGACTTGGCTCTGCACATGCGCCGTCATACCGGTTCTCGACCGTATGCCTGTGGTGTATGTCCAGCACGTTTTATTCAGTCCGGACAACTGAAAGCTCATCGACGATCACAAGGACACTGGGTGGAACAAGAAATACAGTTCCGTGGAAATCGTGTTGAACCTGTACATGTTGAGAATTTGGTTGAAACGCCGATAAAACACCGAAAATCGCGGACCAATCAAAATTCCAATAACAATAACAGTAATAACACAACATCTTCAGTGAATCAGATAATTATTCGAGATTTAAGTTTACTAACTAATAATCGGGAATCAAGTACTGGTACATTTGCACCACTTACGACAAGTACGACAAATGGAATCACAATCACTGCCTTACGTGAAGCAGTCACTAGTCGACCGGTTACAAGTGATACTGAAACTTTTCAAATTAGTACGCCATTTTCAACACAAACTAGTGTCGCCACCACCACATCAACCTCGTTTACATCGAATGATAATTTCAGTTTTCAACAATTTGGATAA
- Protein Sequence
- MDEMEKTKAPFLMDKICRSCMNESNEMQSLFTRMEMAGLETQVSEMLMACASVQVASGDGLPDSICRPCVHQLSNAYTFKQQCESTDIKLRQYISTLTEELKIKEEKNEADSFSIVVKPDIDMGVMDDIYDDNNFQNDWNDSDDEKLKKISKKSPNECKICFKKVSTKGGLKLHMRKHEKEKNDKHICEMCGIAFDKLGQLKKHRLEHHPNGDGGEKNQILGNDKILNSIKNEELKEEVLEEDDDDRNDPDFEIEVNKSRSTKKRDDLGEYECNECHKVLSSYKGLQIHKKRHTGEGLNQCYLCVKTFLKFSHLKRHLLTHGLSTSAIEEIKNENKGKMFLQCEYCDRKFVYRKSFTHHMKTEHAISEEEAQLHGELIIKNEEILKDENNENNGHLPDDTDMNLEEQNELVDQENEEEEDGQEYECHVCNHKFSRANHLTRHMTLHRNVLTHKCDHCEKAYLTEEHLQKHIEEHHVQKSYFCTLCNIPFMRGEHLIRHLKTEHIPEEISEFKCSVCDKVFNTGSLLAKHTKQHLMKDKKHICDVCNKAFSRLDNLKTHQRIHSRIKDPVRLHLCIYCGKEFNNSSNMIVHMRRHTGERPYKCQVCGKGFPRSHDLKCHERIHSGERPYLCTLCGKSFNKSNKLVRHTRVHTGERPYVCNLCGRAFTQSNDLALHMRRHTGSRPYACGVCPARFIQSGQLKAHRRSQGHWVEQEIQFRGNRVEPVHVENLVETPIKHRKSRTNQNSNNNNSNNTTSSVNQIIIRDLSLLTNNRESSTGTFAPLTTSTTNGITITALREAVTSRPVTSDTETFQISTPFSTQTSVATTTSTSFTSNDNFSFQQFG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -