Bneb000461.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- pol
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000001.1:17264033-17319301[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.1 59 5.8 1.3 2 23 1602 1624 1601 1624 0.92 2 19 0.00016 0.0089 17.8 3.5 1 23 1658 1680 1658 1680 0.98 3 19 3.5e-05 0.0019 19.9 0.2 1 23 1686 1708 1686 1708 0.97 4 19 0.00024 0.013 17.3 2.3 1 23 1717 1739 1717 1739 0.97 5 19 2e-06 0.00011 23.8 0.5 1 23 1745 1767 1745 1767 0.97 6 19 0.0095 0.52 12.3 1.6 1 23 1773 1795 1773 1795 0.95 7 19 0.00012 0.0066 18.2 2.8 1 23 1801 1823 1801 1823 0.98 8 19 0.00047 0.026 16.4 5.7 1 23 1829 1851 1829 1851 0.98 9 19 0.00043 0.024 16.5 5.2 1 23 1857 1880 1857 1880 0.96 10 19 7.1 3.9e+02 3.2 0.0 5 23 1964 1983 1960 1983 0.89 11 19 0.16 8.9 8.4 0.4 1 23 1989 2011 1989 2011 0.98 12 19 0.0012 0.065 15.1 6.5 1 23 2017 2039 2017 2039 0.98 13 19 2.5e-05 0.0014 20.4 1.5 1 23 2045 2067 2045 2067 0.98 14 19 0.0011 0.061 15.2 0.8 1 23 2074 2096 2074 2096 0.98 15 19 1.1e-05 0.0006 21.5 2.9 1 23 2102 2125 2102 2125 0.95 16 19 7.9e-05 0.0043 18.8 6.9 1 23 2131 2153 2131 2153 0.98 17 19 0.00069 0.037 15.8 4.2 1 23 2159 2181 2159 2181 0.96 18 19 0.00035 0.019 16.8 2.0 1 23 2187 2209 2187 2209 0.98 19 19 0.013 0.73 11.8 7.5 1 21 2215 2235 2215 2238 0.96
Sequence Information
- Coding Sequence
- ATGCAAGTAAACGAAAATGCAGTTAGTGGCTTCTCACAAGTGCTCGAAGCATTTAGAATACCGGATCCAATTAAATTCCTAcctgaatttaatggaaatcCGAGAACTTTgcatgattttattgaaaatgttgatgaaatCATAGCATGCGTAAGTGTCGATTGGACACAGGGATACGGTAAATTATGGATACGGGCTATCCGTAATAAAATCGTAGGAGAGGCTAACGAAGTTTTAAACATGACCGAACATTTAAATAGCGAAGAAAGACAAGCTTTGTTTAAACTTTGTCGTAAATATGAGGATGTTTTTTATAAAGAAGGTCAAGATCTTTCATTtacgaataaaattaaacacgaaataaaaacaaccgACGATCTACCCGTTTATACCAAATCCTATCGGTATCCTTATGTTCATAAGGAAGAGGTTAAGAAGCAAATTGATAAGATGCTCCATCAAGGCATCATAAGACCAAGCTATTCTCCTTGGAGTAGTCCAATTTGGATAGTTCCTAAAAAACTAGACCAAAGCGGAGTACGAAAATGGCGATTAGTGGTGGACTATAGGAAACTTAACGAAAAAACTATAGGGGATAAATATCCAATCCCAAACATCACAGATATACTAGACAAACTTGGTAAATGCATGTATTTCACTACTCTAGACTTAGCATCTGGTTTCCATCAGATAGAAGTTCATCCTAGGGACATTGAGAAAACTGCTTTTACTGTAGACCATGGACATTTCGAACATGTTCGCATGCCATTTGGACTAAAAAACGCTCCATCAACTTTCCAAAGAGTTATGGATAACGTTCTAAAAGATCTACAAGGTACAATTTGTCTTGtatacatggatgatataattATCTTTTCCACTTCGCTTCAAGAACATATTATTAATCTCGATAAAGTTTTTAGCAGACTAAAAGacgcaaatttaaaaattcagttagACAAAAGCGAATTTCTAAACCGGGAAGTAGCTTTTCTGGGACACATAGTATCAGAAGCAGGTGTAAAACCTAATCCTGATAAAGTAGCTGCTATTAGGAAATTCCCTGTaccaaaaacacaaaaagatattaaatcttttctgggACTTCTTGGATACtacaggaaatttattaaagacttCGCTAGGTTAACAAAACCAATGACTAAATGTTTGAAGAAAGGTGAAACAGTTAAACATACACCTGAGTTCCTTAAATGTTTCGAAACATGTAAGAACCTCTTGACAAACGACCCAATTCTTGCCTATCCAGACTTtaacaaagaatttattttgacaaCGGACGCAAGCAATGTAGCAATCGGAGCAGTCCTTTCCCAAGGGCCTATTGGTAAAGATAACCCAATATGTTACGCTTCTAGGACTTTAACCGATTCAGAATTACATTACTCTACCATAGAAAAAGAACTTTTATCAATCGTATGGGCAACCAAATATTTCAGGCCTTACTTATACGGACGAAAATTTACCATAATTACTGACCATCAACCACTCAGATGGCTCATGTCACTTAAAGAACCAAACAGTAAATTAGTAAGATGGCGACTTAAACTTGAAGAATTTGACTACAAAATTATACACAAACCAGGTCGACAAAATACTAACGCAGACGCCCTTTCACGAATTATAATTGACAGTAACCCCCATACTAATGACGATTCTACGCAAGACACTTCTACACAAGACACTTCTACACAAACAGTACATAGTGCATCAGAGGATGATACCTCCTTAATTCGAATCTCTGAAAACCCccttaatgattttaaaaatcaattaatcatattaaaagatgaaAACATTCAAACTGCAACTAAACGCAAAttccaaattctttttaatacacGTCGACGTATTACAATTACACTTTCTGCTGACGACGACGATATTTTAATctcaattataaaagaaaacattcCACCGAAGgAATATGAAGCACTTAAAACCAAAACAAATGAAAAAGAACCATGCACTACCACACGTGTATATCGACCAAAAAAATGTCCACCATTTGAAGCAACAAAATTTGTGGATCAAGTATTACAAGAAATTGGTTGGACAACGGGTTTACATATGCCAGTTTCCAATGACGAAAATAAGCAGTTAGAAGCTGAACTGGAACGCTTGTTTCATGCACGAGTTACAGCAACAAATAAACTGACACAGCTGAAAAGTCGACGTGAAGAGCTTGAAAATCATATAAAACACATTGATCATGAACGAAGAGAGACTGATGCTTTTTTAACAACACAAAAAACCAATTTAGCAAACGAGATTCAACAGCAAAGAATTACAACATTAGAAATCAGTAAACTGAATCAAGATATTACAaattatGACAAACAAACAAGTGAAATCCAAGAAAGGCAAGCACAGTTGCAAAACAATCTATGTCGTACAATTGCTCGTTTGgaggaattaaaaaaaactgtctCATATGACTCCGATACATTACGTTTATGGGAAGATGCACTCCTTCGTTTGGAAGaggataattcaataataagaAAATTCTCATTACAAGATCAAAACAGAGCTCGTGAACTGGAATTACAGCGTGAAAAATTACAAACTGAATTAATCGACCGTCAACAAACAATGGCCAAAATAGTTTCTGAAATAATGAATTTAGAAACATCATTAAATCGTACGCAGAAATTGTACATGGATGCGAAAAAAGAGCGTGGCAACCTACTGGATCAATGGCGAGAAACTGTGGCGCATCTTCGACAAAGACATCGAGATATGCATTCGATTAATTTGGAAATAGATAAAATAAGAgaagatattgtaaaaaaagCAGAAGAACTTGATGAAAAAAGAACGTTTTATATGAATGAAGTGAATAACAATAAAGAAATGCAGAAACAAATAAAAGACCTAAATAAAGCTACCACAAAAAATCGTGAAGAACTACGAAACCTCGTAACAAAAGTTAGCGATTTTGAACGAGAATTATCTATCATGAAGCGTGAATTAACAACCGCAacaaataatttagaaaatactCGTGCAAGAACAAAGCAACTGACATCGGACATCGCAGAAAAGCATAATCGTTTAGACCAAGctcaaaaaacaaattataatctCAATGTGAAGTTAACAAGTCTTAAAGAAAAAGCACTAACTGTCAATGAACGATCCAAAGAGCTAGAATCAATGCTAACgaataatgaaaaattagtAGGTCATTTAAGATCAGAAATTGCAAAACTAGAAACCACATTTTTTCGTTCAACACaattattaaaagaattaaaagaaaTAGAAAATTCACACATAATAGAAATACGTAATTTGAAAGCAACAACTGAAACATTAGAGAAGGAAGAAAAAAGTATTGATGTCAAAGTTCAACAATGCAAGGAAGAAATATACaactttgaatttcagattGCGCAATTAGAAATGAAAGTTGAAGAGATAGAAGAAACGcgaaaatatttattttgttttgaaaaagaaGGAAAAATTAAAGAGTTAACAGTGATTTGTCAGGAAAAGAATGAGCTTAGTAACATGTTAGCAAAACAAATGGTTCAAATTCAAAACGACATACGTCGACTAGGGAATCAGATATTAACGGAAGCCAGTGAATTATCAAAACtgCAATCTGCAATACAAGATCTAGCAAAAATGGTGGAGGGTAGCAAAAGAGTAGTAAAATCGACTCAGATGAGTAGCCAAGAAAAGCAAGTAgaggaaaatattttgaaattgaaaGTAAAACAAGCAGAAAAGATTCTTGATAACATCGGTGACTGTATATACACATTAGAAAAGCATCGACTGGAAATGGAAGCgGCAATGAAAGAAAGACAATTAGAAATCGGTGTGCAAAAGGATATGTTATcgatgaaaaaaagaaatttactagaagataaatctaaaattaaaactgaacttAAAGAACGATTGTTGAAAATAGACCAGTACAAAAAAAGATTTGAATTAGCGACATCTCTGTTAGGAGTTGATGAAGAAGGAAATCCTTTAACAGCggcttatttaaaaataaaatttgctcaAGAGAAAGCTTTATTACAAAAAGAAGGTGACGACTGggatttaaaagtaaaacgcgCTGAACAAGAAATTGTTGCAATGGAAAATACATTAACAGTAATTAATGCTACGAACAATAAATTTCGTGAGAGTCTTAACACAGTAGATAATaaagATCCGGAAGAAGAACAAttgaatgaattaaaaaaagaatattcatgtcttctaaaaaaattacgtaTATTTCGTGATCGAAAGACAGAAGCTGAAAAAAATGTCGAAGCTGTAAAACAGTTAACTGAAGAAagtttggaaaaaattgatcaaatcaaacaaaagcaaatAAATTTGGAAAAAGATATTAGCGAAACTCAAAAAGGCATTGATTGTCAACAAGAACGTTTAAAAAGAGCTAAACGAGTTCTCGCAAAGCTTATGGCAACATCTCGAAAAGACCAACGAAATGTACATTTCGAGcaaGAAATAAGAATTCGAGAAATGACAATGGTTAATCAAAATGCGTTAAATCAAGTGTTAGAATTAAGTTTTCGAAACTTTGAAGTATACCCAACTATAGAACGATTATGTGATTATTACCGTATTTCAATGCCAAGTGTGGAAAAATACAAACCTGTTCCAAAAACTCTATCGCGTaaaGTTAAACGAAGAAAACGAGTTCAACGATCGGAGAAAAAGGTCGCAGTTAAAAATGAAGAACATGAAGAACGAAGAAAAATGTTACAGCAAATAATAAAAgAATGGAAAAATTATCAGTGGCATTGTACAAAATGCACGGAACAGTTTAATGTTGTTGGAAGTCTAAGAAATCATTTTAAAGAAGTTCACAATTGTTCACCACAGTATCTGTGTAACGAGTGTGCTtcagtgatggaaaattataaaacattcaAGAAACATGTGCGAGGACATcggaataaatttaaatttaaatgtGATATATGTGGGAAGTATTTCAATATGCAGAAACATCTGGAACGGCATAAGGAAAGTCATTCATTAGAGCCGAATTATATATGTCCTCAGTGTGGAAAACTTTTCAAAAGTGCAAGTTCTCTACAAACGCATGGTAGAGCACACTTACCGGAAGAAATTAAATATCAGTTTGATTGTGATCTTTGTCAGAAGAAATTTACAACTAAACAAAGTTTAACTTGGCATAAAAAGATACATCAAGggaTTAAAGAATTTACTTGTGATCAATGTGGAAAAAGTTTTGCGCAAAAAGGAAATTTAGAAAGTCACATTTTTTCTCATACCAGTGCCACTCCATTTAGATGTAATATTTGTTCAAAGACttttaaaactgGTCTACGTTTAAAGCGGCATTCAATTATTCACAATGATGAGAAACCTCATAAATGTAAAGTTTGTGGCAATACTTTCCGTCAAAAATGGACTCTAAATCGGCATGCAAAAGTTCACACGGACGAATTACCTTTCGAATGTGAATactgtaaaaaatgtttcaGATTAAAATCGTTTTTAAAGatTCATTTACGTCAGCATACTGGAGAGCGGCCATATTCGTGTTTAGAATGTAATCATCATTTCACAAATTCATCGAATTACATAAAACATATGCGAGGACGTCATGGGAAAACGAAAACGTCCAATCAAACAAATAATGCAAATTCACTACCACAACAACAACCACACCAACCACCACCGCCCCCACCACCACAACCTGCGCCGCCGCCTATTCAACCAGATcaagtttttcttttagatgGAAAATCAAACAGTAACGAAGATGATGCTGAAAAAGCAAAACGAAGAGAAGAAAGACGGGAACATATAAAGCGAATTAAAgaagCCTGGAAAGAATACAAATGGATCTGTATAGTATGCGATGAACAGTTACCCTCATTGTCTGACTTACGGACCCATTTTCGAGATGTACATAAAAAGAAACCACAATACTCTTGTATGGAATGTTCAAACGTATATGAAGTATTTGACAATTTCAGAAGGCATGTTGCAACTCATCGTGATAAATATCGATTTCGTTGCACAATTTGTACTCGAAGTTTTCATCAgagtaaacatttaaaagacCATTTAGAAACGCACAACACCGAAAAGAAATTTGTTTGTGCTCAATGTGGTAAAGCTTTTAAAACGTCATCTTCATTTCGAAGTCATTCTCGATCACACATAGAAGAACCGCGCAAATatgaatgtaatatatgtaacaAAAGTGTAAATACTAGAGCTAGTTGGCGATATCATCAAAAATTGCACaaagGTATAAAAGATCACACTTGCGAACAGTGTGGGAAAAGTTTTATTCAACAAAGTACACTAAAACATCACATTCAAGCATTACATTCAGATATTAAACCGTACTGTTGTAAACATTGTCAGAGGACttttaagacACCTcagaatttaaacaaacatcTTCAAGTACATAGCGATGTGCGTCCTCATAAATGTGATATTTGTGGCAAATCTTTTCATCGTAGAGGAACATTAAATCTACATAAGACAATTCACACGGATGAAATGCCCTTCCAATGCGACTATTGTAATAAACGTTTCCGTAGAAAACAAGTTTTAGATGTTCATGTACGACAACATACTGGTGAAAGACCGTACTCTTGTTTAGAATGTAACCACCATTTTAGCAATTCCTCGAATTATATAAAACATATGAGATGTCGACACGGTGTAAAGAGTATACGAAAAGATGTTACGTACAGTACAGATCCACAACCAGAACCGCCAAAAAAGACTTATAATCTTAACAATTTGACGTATGTGGGCTTAGAGCAAGTAAATAGAACACCTGCGTTAATGCAGAGTAATGAAgcagcaaataaataa
- Protein Sequence
- MQVNENAVSGFSQVLEAFRIPDPIKFLPEFNGNPRTLHDFIENVDEIIACVSVDWTQGYGKLWIRAIRNKIVGEANEVLNMTEHLNSEERQALFKLCRKYEDVFYKEGQDLSFTNKIKHEIKTTDDLPVYTKSYRYPYVHKEEVKKQIDKMLHQGIIRPSYSPWSSPIWIVPKKLDQSGVRKWRLVVDYRKLNEKTIGDKYPIPNITDILDKLGKCMYFTTLDLASGFHQIEVHPRDIEKTAFTVDHGHFEHVRMPFGLKNAPSTFQRVMDNVLKDLQGTICLVYMDDIIIFSTSLQEHIINLDKVFSRLKDANLKIQLDKSEFLNREVAFLGHIVSEAGVKPNPDKVAAIRKFPVPKTQKDIKSFLGLLGYYRKFIKDFARLTKPMTKCLKKGETVKHTPEFLKCFETCKNLLTNDPILAYPDFNKEFILTTDASNVAIGAVLSQGPIGKDNPICYASRTLTDSELHYSTIEKELLSIVWATKYFRPYLYGRKFTIITDHQPLRWLMSLKEPNSKLVRWRLKLEEFDYKIIHKPGRQNTNADALSRIIIDSNPHTNDDSTQDTSTQDTSTQTVHSASEDDTSLIRISENPLNDFKNQLIILKDENIQTATKRKFQILFNTRRRITITLSADDDDILISIIKENIPPKEYEALKTKTNEKEPCTTTRVYRPKKCPPFEATKFVDQVLQEIGWTTGLHMPVSNDENKQLEAELERLFHARVTATNKLTQLKSRREELENHIKHIDHERRETDAFLTTQKTNLANEIQQQRITTLEISKLNQDITNYDKQTSEIQERQAQLQNNLCRTIARLEELKKTVSYDSDTLRLWEDALLRLEEDNSIIRKFSLQDQNRARELELQREKLQTELIDRQQTMAKIVSEIMNLETSLNRTQKLYMDAKKERGNLLDQWRETVAHLRQRHRDMHSINLEIDKIREDIVKKAEELDEKRTFYMNEVNNNKEMQKQIKDLNKATTKNREELRNLVTKVSDFERELSIMKRELTTATNNLENTRARTKQLTSDIAEKHNRLDQAQKTNYNLNVKLTSLKEKALTVNERSKELESMLTNNEKLVGHLRSEIAKLETTFFRSTQLLKELKEIENSHIIEIRNLKATTETLEKEEKSIDVKVQQCKEEIYNFEFQIAQLEMKVEEIEETRKYLFCFEKEGKIKELTVICQEKNELSNMLAKQMVQIQNDIRRLGNQILTEASELSKLQSAIQDLAKMVEGSKRVVKSTQMSSQEKQVEENILKLKVKQAEKILDNIGDCIYTLEKHRLEMEAAMKERQLEIGVQKDMLSMKKRNLLEDKSKIKTELKERLLKIDQYKKRFELATSLLGVDEEGNPLTAAYLKIKFAQEKALLQKEGDDWDLKVKRAEQEIVAMENTLTVINATNNKFRESLNTVDNKDPEEEQLNELKKEYSCLLKKLRIFRDRKTEAEKNVEAVKQLTEESLEKIDQIKQKQINLEKDISETQKGIDCQQERLKRAKRVLAKLMATSRKDQRNVHFEQEIRIREMTMVNQNALNQVLELSFRNFEVYPTIERLCDYYRISMPSVEKYKPVPKTLSRKVKRRKRVQRSEKKVAVKNEEHEERRKMLQQIIKEWKNYQWHCTKCTEQFNVVGSLRNHFKEVHNCSPQYLCNECASVMENYKTFKKHVRGHRNKFKFKCDICGKYFNMQKHLERHKESHSLEPNYICPQCGKLFKSASSLQTHGRAHLPEEIKYQFDCDLCQKKFTTKQSLTWHKKIHQGIKEFTCDQCGKSFAQKGNLESHIFSHTSATPFRCNICSKTFKTGLRLKRHSIIHNDEKPHKCKVCGNTFRQKWTLNRHAKVHTDELPFECEYCKKCFRLKSFLKIHLRQHTGERPYSCLECNHHFTNSSNYIKHMRGRHGKTKTSNQTNNANSLPQQQPHQPPPPPPPQPAPPPIQPDQVFLLDGKSNSNEDDAEKAKRREERREHIKRIKEAWKEYKWICIVCDEQLPSLSDLRTHFRDVHKKKPQYSCMECSNVYEVFDNFRRHVATHRDKYRFRCTICTRSFHQSKHLKDHLETHNTEKKFVCAQCGKAFKTSSSFRSHSRSHIEEPRKYECNICNKSVNTRASWRYHQKLHKGIKDHTCEQCGKSFIQQSTLKHHIQALHSDIKPYCCKHCQRTFKTPQNLNKHLQVHSDVRPHKCDICGKSFHRRGTLNLHKTIHTDEMPFQCDYCNKRFRRKQVLDVHVRQHTGERPYSCLECNHHFSNSSNYIKHMRCRHGVKSIRKDVTYSTDPQPEPPKKTYNLNNLTYVGLEQVNRTPALMQSNEAANK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -