Bneb029274.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000012.1:13925572-13929219[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0028 0.15 13.9 0.1 2 23 73 94 72 94 0.97 2 21 0.36 20 7.3 0.2 1 23 100 123 100 123 0.96 3 21 0.25 14 7.8 0.2 1 20 128 147 128 149 0.94 4 21 0.0027 0.15 14.0 1.8 2 23 156 178 155 178 0.96 5 21 4e-05 0.0022 19.7 1.5 2 23 186 207 186 207 0.98 6 21 0.011 0.62 12.0 1.4 1 23 213 236 213 236 0.98 7 21 0.0013 0.07 15.0 0.9 2 20 250 268 250 270 0.93 8 21 0.037 2 10.4 5.7 1 23 277 300 277 300 0.96 9 21 7.3e-05 0.004 18.9 3.4 1 23 308 330 308 330 0.97 10 21 0.017 0.94 11.4 0.8 1 23 336 359 336 359 0.98 11 21 0.00035 0.019 16.8 1.0 1 23 851 873 851 873 0.97 12 21 4e-05 0.0022 19.7 1.3 1 21 878 898 878 899 0.96 13 21 0.016 0.88 11.5 0.3 1 23 906 929 906 929 0.96 14 21 0.00026 0.014 17.1 0.7 2 23 951 973 951 973 0.93 15 21 0.00061 0.033 16.0 5.4 1 23 981 1003 981 1003 0.97 16 21 0.073 4 9.5 0.2 2 23 1010 1032 1009 1032 0.92 17 21 0.0027 0.15 14.0 1.1 2 23 1038 1059 1037 1060 0.94 18 21 0.014 0.76 11.7 4.7 1 23 1071 1094 1071 1094 0.94 19 21 0.015 0.79 11.7 0.2 1 23 1099 1121 1099 1121 0.94 20 21 0.00067 0.036 15.9 1.0 1 23 1127 1149 1127 1149 0.99 21 21 0.0079 0.43 12.5 0.5 1 19 1173 1191 1173 1194 0.83
Sequence Information
- Coding Sequence
- ATGGAAAATCAAAAAgtcaacataaattttaacGATCCGGTTAACCAATATAATATCGAAACTAAGATCAAACAAGAACTCcatgaaatatatataaaacaagAGCCTGATTTAGCAACTTTAcatacagaaattaaaattgaatcacCTGTTCCAAATGACACGACCgataaatctaataaaaaacCGAATCGAAACACTAAATACAACGAATTGACATGTGAAACGTGCTCAAAAGTGTTACCGACCGCTCAGGCCCTTAAAGTCCACCAACGATTACACACCGGCGAAAAACCATTCCAGTGTGACGTATGTTCCGAGGCATTTTTGTGGGCCGACCAAttaaaaaaccataaaaaaacgGCACATCCACCTGTAGAATACGAGTGTGACAAATGCAGTCTAATATTCAATGACTACAGTGTGTTCCAGATACATACAGACATGTACTGTAAAAAGGCGCTTAAGTGTGATCTGTGTCCAACGctcacatttaaaacaaaatactttttGGAACGGCACCAAAGAACgcacaaagaaaaacaaaaattagcaAAATGTGATATTTGCGAGAAATCATTCATGTATAACTATAACTTAAATCGTCATCGACTTTCGCATGAACGTTCCAAAGTATTTCAGTGTCACGCATGCGCGAAAACATTCGAACTAAAAACTCAAATGGAGGATCATATAAAAACGGTTCATTATACCGCGCAACAAAGCGTAAAATTACAAGAACCTGCTCAGTGtgaattttgtgaaaaaacttttgTACACCGATACTACTTAGAACGTCACAAACTCGTCTACGGTTGCGCAAAACAATTTAAGTGTGACCAGTGTTCGAAAATGTTCTGTTTTGACACGCAATTGAccaaacataaaataaaatcacacggcgaaaagaaaaaagaactTTTCCAGTGTGAAATATGTCAGAAAACTGTATCAAGGAAATATCATTTAACGCAACACCGACTACTTCATGTTTATCTAAAACCGTTTCAATGTTACAACTGTTTAGGAGTATTTAAATCGGATAGTCAATTAAGTGAACATAGACGAACTGTCCACCAAATTGTTGAAGACGATCAAAATAACATTTATTCGTCCATGAAAGATCAAGAAAATGGTCTGAAACCGTTtcagtataatatatatttaaatacttttgtACCAGGTCCGCAATCGATCAAGAACCATGGAAGCGAACTCCAGGTGCCTTCAGAAGAGCATAATCGAACCACTAACATGTCTTCAGAGAAACATCAGAACGATGTGTATGTATTTCCAGACAAACTTCCAGAAAACGCCCATCCGAAATCAATAAAATCTGAAAAGGGAAGTGAACTCCACGTGCGTCTGGAAGACTGTGATCGAATCGTCGACACACCGATCGAAAAAAATCTAAACGTTATTCACCTGCTTTCAGAAAACCTCGAAGAAGACGTCCACCAAATACcagtaaaatatgaaaatgaacTTCATAATCGAGTCATCGATACGCCTTTGGAAAATCATCGAAACGTTGCCGGTCAGAACGGCCACTCGAAACCAGATACGTCTATAGAGGAGTATCAAGATAAACCTATAAAAGACGCTGTGAAACCTGCAAATGTACTCCACGTGCCTCTGGAAGAACATGATCGAACTGTCAACACTATCGtcgaaaaaaatctaaatgatATTCACCTGCTTTCAGAAAACCTCGAAGAAGACGTCCATCAAATaccagtaaaaaataaaaatgaacttCATGTGTCTTCAGAGGAACATAATCGAGTCGTCGATACGCCTCTGGGAAAACACCAAAACGTTGCCGGTCAGGACACCCACTCGAAATCAGATACGCCTCCAGAGGAATATCAGGGTGAACCTATAAAAGATACCATAAAGGATGCAAATGTACTCCACGTACCTCTGGAACGAATCATCAACACGCTCGTAGAAGAACATCTAAATGATATTCGTCTGCTTTCAGAAAACCTTGAAGAAGACGTCCATAAAATACCAGTAAAACATCAAAATGAACTTCATGTGTCCCAAGAGGAACATAATCGAGTCGTCGATACGCCTCTGGAAAAACATCAAAACATTGCTGGTCAGGACGCCCACCCGAAACCAGATACGTCCCTAGAAGATTACCAGGATGAACATATAAAAGAGGCCGCGAAAAATGCAAATTTACTCCATGTACCTCTGGAAGAGCATAATCGAATTGTCAACACGCCCGTCGAAAAACATCTAAACAATATTCACGTGCTTTCAGAAAACCTTGAAGAAGACGTCCATCAAATACCAGCAAAACATGAAAATGTGTCTCCAGAGGCACATAATCGAGTCGTCGATACGCCTCTGAAAAAATCCCAAAACGTTGCCGGTAAGGACACCCACCTGAAACCAGTAAACAACGAAAATGAACTCCATACGCTTCCAGAAGGTATCTCTtcactcccaaaaaaatataacgaaagaaaaacaaaagaaaaacaaaaaaataacgtcTCTCTGCCTTcagaaaaattccaaaaaagtgatAATGAAAAACATTCGTGTTCGatatgtttgaaaaaattttccgaacCCACTTCTCTAACAGAACATATGCTTATACACAAAGATCCTCTATATAAGTGTAAATTTTGCCCCAAAACATTCCGACAAAAACAAAGTTTAGCGAAGCATGAACGGGCGCGTAACTGTATGGGCCCGTTTCAATGTGATGTATGTTCGCGAATATACGTAAGCGCCCGAGCATTATACGAACATAAAAGAGAATATCACGTACGTCCaaaaaaatccgttcaatataTTTCCGAGTCCTCCGCAGAACTCGAAAAAAAACGTGAATGTCGaatatgtttaaaaacattttccaaATCCTCGTCTCTAACGAACCATATGGCGGCACAGCACGGACTGCGCAGAGATGGCATacataaatgtaaattttgcCCGAAAACATTTCAAACAACCCAAAATTTAAGGCGTCATGAACGACTGCACACCGGTATGGAACCATTAAAATGTGACATGTGCCCGATGACATTTTCACTCGAATATAAATTAGTCGAACATAAACAAGATGCGCATTCACATATGCGCATGAAATGCAATATATGCGCAACACAGTTTGACACGCTTAGCGAATTTCAAAAGCATATGGCGGCGCACCATCACGCAGCCGCAGACAGTGGAATGGAGAAGTTTTTGTGCCATCTATGTTGGCGGTCATATTCAAAATCGTACGATCTAATTCAACACACAAGACATAACCATGGCGAACGTAACTATCTATGTGCATTCTGCCCGAAGATGTTTATAATGCGATCGAAACTGGTTAAACACGAAGAAATTCATCTGTTGGAGCGGGAATTTAAATGTGATAAATGTTCGATGCGATTTTTTGTTGCGGAACAACTTGAGGCGCATCGTAAAACGCACGCAAATGAGCGAAAGCTATTTAAGTCTCGTTTGAAACGTCAACAAAAAGTCCAAACCAGTGGACCACCTTATACATGTAATATATGTGGAAAAGTGTTCACAAGTATTTGGGGCATGGATACACATCACCATAATTCACAGTTATTTAAAGCGTTGACGAAAGGAAAGAAAATTGGAATTGTACGATTTTTTAACCTCTAG
- Protein Sequence
- MENQKVNINFNDPVNQYNIETKIKQELHEIYIKQEPDLATLHTEIKIESPVPNDTTDKSNKKPNRNTKYNELTCETCSKVLPTAQALKVHQRLHTGEKPFQCDVCSEAFLWADQLKNHKKTAHPPVEYECDKCSLIFNDYSVFQIHTDMYCKKALKCDLCPTLTFKTKYFLERHQRTHKEKQKLAKCDICEKSFMYNYNLNRHRLSHERSKVFQCHACAKTFELKTQMEDHIKTVHYTAQQSVKLQEPAQCEFCEKTFVHRYYLERHKLVYGCAKQFKCDQCSKMFCFDTQLTKHKIKSHGEKKKELFQCEICQKTVSRKYHLTQHRLLHVYLKPFQCYNCLGVFKSDSQLSEHRRTVHQIVEDDQNNIYSSMKDQENGLKPFQYNIYLNTFVPGPQSIKNHGSELQVPSEEHNRTTNMSSEKHQNDVYVFPDKLPENAHPKSIKSEKGSELHVRLEDCDRIVDTPIEKNLNVIHLLSENLEEDVHQIPVKYENELHNRVIDTPLENHRNVAGQNGHSKPDTSIEEYQDKPIKDAVKPANVLHVPLEEHDRTVNTIVEKNLNDIHLLSENLEEDVHQIPVKNKNELHVSSEEHNRVVDTPLGKHQNVAGQDTHSKSDTPPEEYQGEPIKDTIKDANVLHVPLERIINTLVEEHLNDIRLLSENLEEDVHKIPVKHQNELHVSQEEHNRVVDTPLEKHQNIAGQDAHPKPDTSLEDYQDEHIKEAAKNANLLHVPLEEHNRIVNTPVEKHLNNIHVLSENLEEDVHQIPAKHENVSPEAHNRVVDTPLKKSQNVAGKDTHLKPVNNENELHTLPEGISSLPKKYNERKTKEKQKNNVSLPSEKFQKSDNEKHSCSICLKKFSEPTSLTEHMLIHKDPLYKCKFCPKTFRQKQSLAKHERARNCMGPFQCDVCSRIYVSARALYEHKREYHVRPKKSVQYISESSAELEKKRECRICLKTFSKSSSLTNHMAAQHGLRRDGIHKCKFCPKTFQTTQNLRRHERLHTGMEPLKCDMCPMTFSLEYKLVEHKQDAHSHMRMKCNICATQFDTLSEFQKHMAAHHHAAADSGMEKFLCHLCWRSYSKSYDLIQHTRHNHGERNYLCAFCPKMFIMRSKLVKHEEIHLLEREFKCDKCSMRFFVAEQLEAHRKTHANERKLFKSRLKRQQKVQTSGPPYTCNICGKVFTSIWGMDTHHHNSQLFKALTKGKKIGIVRFFNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -