Bneb008244.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000001.1:164228025-164244286[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.086 4.7 9.2 0.6 2 23 7 29 6 29 0.96 2 17 0.00049 0.026 16.3 0.5 2 23 35 57 34 57 0.97 3 17 0.72 39 6.3 2.1 1 23 59 82 59 82 0.95 4 17 0.00013 0.0068 18.2 1.1 1 23 116 138 116 138 0.98 5 17 6e-06 0.00032 22.3 1.9 1 23 144 166 144 166 0.98 6 17 0.018 1 11.4 0.4 2 23 173 193 172 193 0.97 7 17 8.3e-05 0.0045 18.7 1.9 1 23 200 222 200 222 0.97 8 17 0.019 1.1 11.3 0.3 1 23 301 324 301 324 0.97 9 17 0.35 19 7.3 0.2 1 21 329 349 329 352 0.76 10 17 0.079 4.3 9.4 4.3 1 23 354 376 354 376 0.98 11 17 5.2e-05 0.0028 19.4 2.6 1 23 382 404 382 404 0.98 12 17 8.7e-07 4.7e-05 25.0 0.3 1 23 410 432 410 432 0.97 13 17 0.00026 0.014 17.2 2.4 1 23 438 460 438 460 0.97 14 17 8.2e-06 0.00045 21.9 0.0 1 23 466 488 466 488 0.98 15 17 1.5e-05 0.00081 21.1 4.4 1 23 494 516 494 516 0.98 16 17 1.1e-06 5.8e-05 24.7 1.3 1 23 522 544 522 544 0.97 17 17 2.6e-05 0.0014 20.3 2.7 1 23 550 572 550 572 0.98
Sequence Information
- Coding Sequence
- ATGGAAATGCATCcaataaaatgttactattGCCCTCTGTATTTTAAGGATTTAGTCACACGTAGAATTCATGTTAAGACACAACATGACGATCAGAAGCTTAAATGTGATTATTGTAACAGTCGATTTCGATTGCCGTCGTTATTAGAAGTGCACACGAAAACCGTGCATGAATTTAAATGTTGTTATTGTTTACAACCGTGTAATGACAAAGAAGCCTTGGACGAACATAAGGAAGTCGCACATTCAAACGATCAGTCGTGTATTTGTTATAAGTGTGGACTTAAATGTAACTCGAAAATAATTTTGCTTAATCACGTTAAGGGACATGATAAGGAATGGAATTATATTTGTGAACAGTGTGGTAAAGGTTTCGTTCATATAGCACAGTTAAAATATCATACTAATCGGCATAATGGTAATAAACGGTACAAATGTTCCATCTGTGAAAAGAGATTCTATCGCAAAAACCAACTAACATCACATCTTGAAATACATGAAACAAACAGAGAAACTCAATGTAATGAATGTGGAATTATTCTCTTCAAAAGTAATCTTGATAAACACTTACTGACTCATCAGACAAAAGAGAAAATTCATCAGTGTAAAATCTGTGATAAATCTTTCCTACGATCAGATACTTTAAAAATGCATATACAAGCTCATCTAGaCGACGTTAAAGAAGAACCGTACAATGAAgactataaaacaaatttaacatTGAAATCTGAAACGCACGAATCAAATGTTGTTGACGATTTTAGTGAAACATATATTAAATCCGATCAGGAAGATGTGAGTGAGAGTAGTGATTACGAACCTAAATCCAATAAACGTAACAGtgataaaaaaacaacaaaaaaatcaaaaaataaacagaaATCCACAAAAAAATCGGAATACGAATGTGAAGAATGTTCAGCTGTTTTGCCTTCGATGAAACACTTAAAAGAACATGTGAAAATATATCATACACATCAGTCCTATAAGTGTAATATTTGTGAGAAAGTTTATTTAGCTATCGGTAGTTTACATAATCATGTACAGGCAGCGCACGAATTCACTTGTAATAGGTGTTTTAAAAAGTGTGATAATGAAAATGAACTTAACGATCATTACAAAGAACATAAAGAGAATCATTTATTCTCCTGTAAAGAGTGCGGGAAAGGATTTCAGAAGAAATTTAGACTTATTTATCATATGagaACACATTCAGGGGAACGACCACATATGTGTACTGTTTGTGGCAAAGCATTTGCGCTTCGTGGAAATCTGAATGCACACATGCGAATTCATACAGGAGCAAAACCGTATCGATGTCACATATGCGATGCAAGTTTTAATCAACTGCCTACTTTACGCAGTCATCTGATTCATCATACACAAGAAAAGAATTACGTTTGTCCTATCTGCGGGAAAGCGTTAGCGAGAAAATCAGGGTTGTCACAACATTTATTATCACATTCTGGTGAAAAGAGATATTCATGCAATATTTGTGGGAAAAAATTTACGCATTCATCATCTCGAAATACACATTTAAGAAATCATTCAGgCGAACGAAATCACAAATGCAACGTGTGTGGTAAAGAATTTAGCCGTGCTGATAATTTGAGAATCCACAACAAAATTCATACAGGCGAGAAACCACACGTTTGTAGCGTTTGTGGAAGAAGCTTCATTCAGCTTCATGTGTTAAATACACACATGAAAACACACCGCGATTAA
- Protein Sequence
- MEMHPIKCYYCPLYFKDLVTRRIHVKTQHDDQKLKCDYCNSRFRLPSLLEVHTKTVHEFKCCYCLQPCNDKEALDEHKEVAHSNDQSCICYKCGLKCNSKIILLNHVKGHDKEWNYICEQCGKGFVHIAQLKYHTNRHNGNKRYKCSICEKRFYRKNQLTSHLEIHETNRETQCNECGIILFKSNLDKHLLTHQTKEKIHQCKICDKSFLRSDTLKMHIQAHLDDVKEEPYNEDYKTNLTLKSETHESNVVDDFSETYIKSDQEDVSESSDYEPKSNKRNSDKKTTKKSKNKQKSTKKSEYECEECSAVLPSMKHLKEHVKIYHTHQSYKCNICEKVYLAIGSLHNHVQAAHEFTCNRCFKKCDNENELNDHYKEHKENHLFSCKECGKGFQKKFRLIYHMRTHSGERPHMCTVCGKAFALRGNLNAHMRIHTGAKPYRCHICDASFNQLPTLRSHLIHHTQEKNYVCPICGKALARKSGLSQHLLSHSGEKRYSCNICGKKFTHSSSRNTHLRNHSGERNHKCNVCGKEFSRADNLRIHNKIHTGEKPHVCSVCGRSFIQLHVLNTHMKTHRD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -