Basic Information

Insect: Brachynemurus nebulosus
Gene Symbol: -
Assembly: GCA_035578155.1
Location: JAPWDM010000005.1:14539672-14548399[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00028 0.015 17.1 1.2 1 23 149 171 149 171 0.98

2 12 0.0024 0.13 14.1 1.7 3 23 177 197 176 197 0.93

3 12 1.1e-05 0.00059 21.5 3.0 1 23 203 225 203 225 0.98

4 12 2.6e-06 0.00014 23.5 1.4 1 23 230 252 230 252 0.97

5 12 3.8e-06 0.00021 22.9 0.7 3 23 260 280 258 280 0.96

6 12 0.00015 0.0083 17.9 3.1 1 23 286 308 286 308 0.99

7 12 1e-05 0.00056 21.6 0.1 1 23 314 336 314 336 0.98

8 12 0.00032 0.018 16.9 3.4 1 23 342 364 342 364 0.99

9 12 9.7e-07 5.3e-05 24.8 0.1 1 23 370 392 370 392 0.99

10 12 6.8e-06 0.00037 22.1 2.1 1 23 398 420 398 420 0.98

11 12 1.3e-07 7.3e-06 27.5 0.8 1 23 426 448 426 448 0.98

12 12 2.7e-05 0.0015 20.3 0.2 1 23 454 476 454 476 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00028	0.015	17.1	1.2	1	23	149	171	149	171	0.98
2	12	0.0024	0.13	14.1	1.7	3	23	177	197	176	197	0.93
3	12	1.1e-05	0.00059	21.5	3.0	1	23	203	225	203	225	0.98
4	12	2.6e-06	0.00014	23.5	1.4	1	23	230	252	230	252	0.97
5	12	3.8e-06	0.00021	22.9	0.7	3	23	260	280	258	280	0.96
6	12	0.00015	0.0083	17.9	3.1	1	23	286	308	286	308	0.99
7	12	1e-05	0.00056	21.6	0.1	1	23	314	336	314	336	0.98
8	12	0.00032	0.018	16.9	3.4	1	23	342	364	342	364	0.99
9	12	9.7e-07	5.3e-05	24.8	0.1	1	23	370	392	370	392	0.99
10	12	6.8e-06	0.00037	22.1	2.1	1	23	398	420	398	420	0.98
11	12	1.3e-07	7.3e-06	27.5	0.8	1	23	426	448	426	448	0.98
12	12	2.7e-05	0.0015	20.3	0.2	1	23	454	476	454	476	0.99

Sequence Information

Coding Sequence: atgaacagTAAAATTGAACAAACTTGTCGTACTTGCTTATTACAACGAAATACAAATGAATTACAGTCAATTTTTCGTGACAACATCCACGTTTTAATAATGGAAGTTGCTTCGGTTAAAatagatgAAAATGATGGTTTAccattaaatatatgtatacaatgtGTTCTACAAGCTGATGtagcttttaattttaaacgatTATGCGAAAAAAGTGATTTGGAGTTACGTAAAATATACTATTCAAATGTAAATGAAAATACAAAAGGTGATAATAATGAAGATGAAAATGTTCAAGAAGTGAATAATACGACTGAAAATATACAATTATTCGCTGGTAAAAAGACTGATTTAGAAGAAGGCAataatgatgaatttataaataaagatgACGCAGTCGAAATTCAAGAAACAAATGATGATGGAAccaaaaaaaatgtacaattcACTTGTACACAAtgtccaaaaaaattcaatcgatACTTAGGCCTTAAAATTCATTTAGCTAAACATAAACAATCGCGAAAatgtataatttgtaaaaaagattttaatactttAAAATTGCTGAAAGAACATATGAAATCTCATCCGGACTACAAACCACAcgaatgtaaaatatgtaagaaaaaatttagcTTTCCAACCAGCTTAGGCAAACATATGCGTATTCATGGTGAACGGAAACATATTTGTGATACATGTGGCAAAGGTTTCTACGAACCCGGTCATTTAAATGTGCATATGCGAACGCACACTGGCGAAAAACCAATAATTTGCCCGGTGTGTGGCAAACGATTTTCCGATCGTCATGGTTTGACAGCGCACAATAAAACGCATACCGGCGAAAAAAATTACGAATGTGAAATCTGTCATAAAAAGTTTGGACATTCATTTGTTTTGCGAGTTCATTTACGAATTCATACGGGCGAGAAACCGTTCATATGTTCAGTGTGTGGAGCAGCTTTTGCTAGTTCGTCGTATTTGACTATTCACACACGATCGCACACTCAGGAAAGACCGTATAAGTGTTCTGCATGTTCAAAGGCGTTTACAAGTAAATGTGCCTTAACTGCACACTTTAAAACGCACACCGGCGAACAAAAGTATCAGTGCAACATTTGTGGTAAAAGAGCCGCCCGTGCAGCCGATCTAAATACGCATATGCGTTCACATACCGGCGAAAAACCATACGCGTGTCCATATTGCTCAAAACGGTATCATTCGTCCAGTAATTTAGCGGCTCATAAACGAACGCACTCCAGTGATCGTAATTTTGTATGTACAAAATGTGGAAAAGCCTTTAAAGATTCTAGAACGTTGCAAAGtcatatacgtatacataccGgaGAAAGACCATACGTTTGTACGATATGTGGAAATCGTTATATTCAATCGGGCCAATTAGCTGCGCATCGAAAAACTCATTTTATATCGAGTTATATAGTAAATCAAAAAACGACTTCGAAAATTCTTAAAACTGGAACCTCGTAA
Protein Sequence: MNSKIEQTCRTCLLQRNTNELQSIFRDNIHVLIMEVASVKIDENDGLPLNICIQCVLQADVAFNFKRLCEKSDLELRKIYYSNVNENTKGDNNEDENVQEVNNTTENIQLFAGKKTDLEEGNNDEFINKDDAVEIQETNDDGTKKNVQFTCTQCPKKFNRYLGLKIHLAKHKQSRKCIICKKDFNTLKLLKEHMKSHPDYKPHECKICKKKFSFPTSLGKHMRIHGERKHICDTCGKGFYEPGHLNVHMRTHTGEKPIICPVCGKRFSDRHGLTAHNKTHTGEKNYECEICHKKFGHSFVLRVHLRIHTGEKPFICSVCGAAFASSSYLTIHTRSHTQERPYKCSACSKAFTSKCALTAHFKTHTGEQKYQCNICGKRAARAADLNTHMRSHTGEKPYACPYCSKRYHSSSNLAAHKRTHSSDRNFVCTKCGKAFKDSRTLQSHIRIHTGERPYVCTICGNRYIQSGQLAAHRKTHFISSYIVNQKTTSKILKTGTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -