Bneb028695.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- Znf639
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000011.1:16415920-16442025[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0051 0.28 13.1 0.9 1 23 249 271 249 271 0.93 2 21 3.7e-06 0.0002 23.0 0.1 1 23 277 300 277 300 0.97 3 21 0.0005 0.027 16.3 2.2 1 23 315 338 315 338 0.96 4 21 0.0083 0.45 12.4 1.4 1 23 376 398 376 398 0.98 5 21 0.14 7.6 8.6 2.4 1 23 404 427 404 427 0.94 6 21 0.013 0.7 11.8 0.4 1 21 433 453 433 454 0.96 7 21 0.0092 0.5 12.3 0.4 1 23 567 590 567 590 0.95 8 21 0.00025 0.014 17.2 2.8 1 23 596 619 596 619 0.97 9 21 2.1 1.1e+02 4.9 1.8 1 23 699 721 699 721 0.91 10 21 3.2e-06 0.00017 23.2 2.0 1 23 727 750 727 751 0.96 11 21 0.0017 0.092 14.6 1.7 2 23 766 788 766 788 0.95 12 21 0.0051 0.28 13.1 0.1 2 23 800 822 799 822 0.92 13 21 0.028 1.5 10.8 1.8 1 23 827 849 827 849 0.99 14 21 1.7 94 5.1 1.4 1 23 855 878 855 878 0.94 15 21 0.00085 0.046 15.5 2.8 1 23 884 906 884 906 0.98 16 21 0.00016 0.0085 17.9 0.8 3 23 914 934 912 934 0.96 17 21 0.0044 0.24 13.3 0.8 1 23 940 962 940 962 0.91 18 21 0.0023 0.13 14.2 0.5 1 23 968 990 968 990 0.98 19 21 0.0048 0.26 13.2 0.8 2 23 997 1018 996 1018 0.97 20 21 1.4e-06 7.4e-05 24.3 3.6 1 23 1024 1046 1024 1046 0.99 21 21 0.00026 0.014 17.2 5.4 1 23 1052 1074 1052 1075 0.96
Sequence Information
- Coding Sequence
- ATGAACGACAGTCAAAATGAAGACCTTAAAAATACAATTGTATTCGCAACAGAGTTCGGAACTGTTTGTAGAACTTGCCTTTCAAAAGACTGtgtaatgtttaatttaaatgaaccTGGTATCGATAATAATAAAAGACTATTTGAAATGCTGCATGAGTGTACTTCTATTCAAgtattaGAAAATGATCGTTTACCAAAAGTTATTTGCGAAGAatgtgttaataaaattaacacctggtatgaatttaaattaaactgtTTAAAATCGGAAGAAACGATATTAAGGCAGTTAGAACAAATAGACTCGTTGcaacaaacaaatcaatttaattttgaaaccaTTAAATTTGAGGAATACGATGACTACGTACTGGATCAAAATAGTTCAAATGACAAATCGGATGGTGattataatgataataaaataaatttagtaaaGAGAAAGAAGAGACGGAAAAAATCCAACAGCAATATATTATTGGAAACAGAAGGTGTAGATCATAATGTTGAACTTAAAgatgaagaattttttaaacaagaacAAACCGAGAAATTTGATACAGACCTGTACAACGCAATTACCGAAAATGTTACTGAAAATGACATAGAGACTGAGAAAACGGAAGAGATTGGAATACATGAAAATTCATTAAAAGAACTAGTTGTACAAAATGAAAACAACAAATTGATTAAAGATGAACAAGCACTTATTGAAGACcaaattgaaaaattggatAAAAACTTTCAGTGTAAAATATGccagaaaatttttaagaatagtATGCTCATTGTAAACCACGTGTCCTTTCATCTAAAATACGAACGTTTTAAATGTCCTGAATGCGGTAATCAATTCGTAACAGCGGGTAATTTGAATCGACATATCAAACAAGTTCATTGTTCAAATAATCCGAAGAAAAAAGTTCACACCAGAACTATGTATCCATGTCAcctttgtaataaaatgtttccaACTTTACGTACGTTCCAAAATCATTTAAGCAGTGACCACAAACAAAAAGTACAACGTAGCTACGTCcccataattttcaatttagatCAGAAAATTGACGATAATAATCCATTAGACGAGGAGACCACCAACATTCAATTAGAGAAAAAGTATGAATGTGATCTATGTACCAGGTCGTATCATACGGAGAAAGCACTGATGGGACATCGACGTATTCATGGTGAAAGAAGTGGCTATCATTGTAAATTTTGTTCGATGACGTGTTCCACGCCCCAAGAACTGGACGATCATATTGCACAAGAACATAAAAGTACAAATATTTATACCTGCCAGTTGTGCTCAAAGGAATTTTATGCTGAAAGAAAGTTAAGAAGGCATATACAGgTATTAGAAAATGATCGTCTACCGAAAGTTATATGTGAAGAatgtgttaataaaataaacatttggTATGAATTTAAGTTAAACTGTTTAAAATCAGAAGCAACGATATTAAGGCAGTTAGAACAAGTCGAACCATTACAACAAATAGATCAGTTTAATTTAGAAATCGTGAAAACTGAGGACTATGAAGATTACGTGTTAGATCAAAATGATCTATATGATAAACTGGAGAGTGATGGTAGCgataataaaacaaatgtaaGACGAAAAAGAAGACGGAAAAAAACGGGCAACAATTCGTTGTCAGAAAcgaaatggtttaaaaaagtGAGAGGGGCATATAAATGTACAGTATGCGGAAAGCAGGAGATAAGACGTAGTCTATTGAAACAACATGTAACGGTGGACCACGCGgaccttttttctttcaaatgtaTGTACTGTAAcgaaattttcacgaagaaatttAGCTTAAAACGACATCTGGTTACAAATCATAATATTCAACTTGAAGATGATCAGATTAAACAGGAACAAACCGAACAGACCGACACAGATTTGTACAATGTAATTTGTGAAAATGTGATTGAAAATGGGATAAAAACTGAGGACGGAGAGAGAATAAAAACAGACGAACATATGTTAAAAGTGTTGGTGGCACAGTACGAAAGTGACGAATCACTTAAAGATGAACGAGCAGTTGCCGAAGATCAAATCGAAAAATTACAGAAGGGCTATCgatgtaaaatatgtaatataacaAAAAAGAGCCTTACAAATATGATGAATCATGTATTCTTCCATCTGGaagtaaaacattttaaatgccCTGAGTGTGACAAACGATTCGTTACAACATCGAACGTAAATCGGCACATTAAACAAGTCCATCACTCAACCAAACCAAAGAAACGTGTTCGTGTAAAAACTAGCCGTACGTGCCACCAatgtaataaagtttttcccacTTTACGCATGTATCAGAATCATTTAAGCATTGAACATAAACAAAAAGTGCGCCGAGGGTACGATCCAGTCACATGTAATATATGCCAGAAAATTGTATATAACAGTAATGCATTGAAAAAGCACATAGCCGGCATTCATTTACAGAAAAAGTATAAATGTGATTTATGTACTATGTCGTATCATACGGAGAAAGGACTGATGGGACATCGGCGTGTACACGGTGAAAAAAGTGGCTACCATTGTAAATTTTGTTTGGTGACGTGTCCCACGCCCCAAGAACTGGACAGTCATATTGCGCAAGAGCATAAAGATGCAAAATTGTATTCTTGTCATTTGTGTTCAAAGGAATTTTATGttgaagaatatttacaaaaacatataaagaatcaTACAGCGAAACCAAAACATCTATGCAATATTTGTGGAAAAGCATTTTTATTAAGTTCAAATTTAACCACTCACATTCGAGTACATACTGGGGAAAAACCTTACGTTTGTACAATTTGTAatgcCACATTTTCTCAACATTCGTCGTTACGTTTCCATGCAGCTGTGCATAATGATGAACGACGATTTGAATGTGATGTTTGTGGCAGTAAATGGAAACGGAAAACGGAATTAACGCAACATATGAAAATACATTCAGAAGCACCGAGAATTAAGTGTGATTTTTGTGGGCGAGAATTTTTATATCGGAAACGATTGACAGCACATATGAGGATTCATACtggAGAAAAGCCGTTTCGATGTACATTTTGTGACAAAGCTTTTCGTCGTTCGGGTCATCTCAAAGTTCATGTACGAACTCATACGGGGGAACGTCCTTATGTTTGTTCCGTGTGTAATCGAGGCTTTATACAAAATCATTGTTTAATAACGCATATGAATACTCATCATAAAGACGCATTATAG
- Protein Sequence
- MNDSQNEDLKNTIVFATEFGTVCRTCLSKDCVMFNLNEPGIDNNKRLFEMLHECTSIQVLENDRLPKVICEECVNKINTWYEFKLNCLKSEETILRQLEQIDSLQQTNQFNFETIKFEEYDDYVLDQNSSNDKSDGDYNDNKINLVKRKKRRKKSNSNILLETEGVDHNVELKDEEFFKQEQTEKFDTDLYNAITENVTENDIETEKTEEIGIHENSLKELVVQNENNKLIKDEQALIEDQIEKLDKNFQCKICQKIFKNSMLIVNHVSFHLKYERFKCPECGNQFVTAGNLNRHIKQVHCSNNPKKKVHTRTMYPCHLCNKMFPTLRTFQNHLSSDHKQKVQRSYVPIIFNLDQKIDDNNPLDEETTNIQLEKKYECDLCTRSYHTEKALMGHRRIHGERSGYHCKFCSMTCSTPQELDDHIAQEHKSTNIYTCQLCSKEFYAERKLRRHIQVLENDRLPKVICEECVNKINIWYEFKLNCLKSEATILRQLEQVEPLQQIDQFNLEIVKTEDYEDYVLDQNDLYDKLESDGSDNKTNVRRKRRRKKTGNNSLSETKWFKKVRGAYKCTVCGKQEIRRSLLKQHVTVDHADLFSFKCMYCNEIFTKKFSLKRHLVTNHNIQLEDDQIKQEQTEQTDTDLYNVICENVIENGIKTEDGERIKTDEHMLKVLVAQYESDESLKDERAVAEDQIEKLQKGYRCKICNITKKSLTNMMNHVFFHLEVKHFKCPECDKRFVTTSNVNRHIKQVHHSTKPKKRVRVKTSRTCHQCNKVFPTLRMYQNHLSIEHKQKVRRGYDPVTCNICQKIVYNSNALKKHIAGIHLQKKYKCDLCTMSYHTEKGLMGHRRVHGEKSGYHCKFCLVTCPTPQELDSHIAQEHKDAKLYSCHLCSKEFYVEEYLQKHIKNHTAKPKHLCNICGKAFLLSSNLTTHIRVHTGEKPYVCTICNATFSQHSSLRFHAAVHNDERRFECDVCGSKWKRKTELTQHMKIHSEAPRIKCDFCGREFLYRKRLTAHMRIHTGEKPFRCTFCDKAFRRSGHLKVHVRTHTGERPYVCSVCNRGFIQNHCLITHMNTHHKDAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -