Basic Information

Insect: Brachynemurus nebulosus
Gene Symbol: -
Assembly: GCA_035578155.1
Location: JAPWDM010000003.1:30930225-30935816[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.47 25 6.9 0.2 3 23 186 205 184 205 0.95

2 20 0.0008 0.043 15.6 1.4 1 23 211 234 211 234 0.95

3 20 0.0043 0.23 13.3 1.6 2 23 241 262 240 262 0.97

4 20 0.0001 0.0056 18.4 0.7 2 23 270 291 270 291 0.97

5 20 0.014 0.75 11.8 0.4 3 23 299 320 297 320 0.96

6 20 0.00014 0.0078 18.0 1.6 1 23 354 377 354 377 0.97

7 20 0.00013 0.007 18.1 1.0 3 23 391 411 390 411 0.98

8 20 0.00013 0.0069 18.2 1.4 1 23 417 439 417 439 0.97

9 20 0.012 0.68 11.9 6.6 1 23 445 467 445 467 0.98

10 20 8.2e-05 0.0045 18.8 1.1 1 21 473 493 473 494 0.95

11 20 0.00036 0.02 16.7 3.3 1 23 650 673 650 673 0.97

12 20 0.16 8.9 8.4 3.0 2 23 680 701 679 701 0.97

13 20 1.2e-06 6.3e-05 24.6 2.4 2 23 707 728 706 728 0.97

14 20 0.00012 0.0068 18.2 1.8 2 23 735 757 734 757 0.96

15 20 6.3 3.4e+02 3.4 0.2 2 9 768 775 767 787 0.84

16 20 2.5e-05 0.0014 20.4 1.4 1 23 793 816 793 816 0.97

17 20 9.8e-06 0.00054 21.6 0.4 3 23 827 847 826 847 0.99

18 20 0.0015 0.08 14.8 3.0 1 23 853 875 853 875 0.98

19 20 0.019 1 11.3 2.4 3 23 883 903 881 903 0.96

20 20 1.6e-05 0.00085 21.0 1.0 1 23 909 931 909 931 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.47	25	6.9	0.2	3	23	186	205	184	205	0.95
2	20	0.0008	0.043	15.6	1.4	1	23	211	234	211	234	0.95
3	20	0.0043	0.23	13.3	1.6	2	23	241	262	240	262	0.97
4	20	0.0001	0.0056	18.4	0.7	2	23	270	291	270	291	0.97
5	20	0.014	0.75	11.8	0.4	3	23	299	320	297	320	0.96
6	20	0.00014	0.0078	18.0	1.6	1	23	354	377	354	377	0.97
7	20	0.00013	0.007	18.1	1.0	3	23	391	411	390	411	0.98
8	20	0.00013	0.0069	18.2	1.4	1	23	417	439	417	439	0.97
9	20	0.012	0.68	11.9	6.6	1	23	445	467	445	467	0.98
10	20	8.2e-05	0.0045	18.8	1.1	1	21	473	493	473	494	0.95
11	20	0.00036	0.02	16.7	3.3	1	23	650	673	650	673	0.97
12	20	0.16	8.9	8.4	3.0	2	23	680	701	679	701	0.97
13	20	1.2e-06	6.3e-05	24.6	2.4	2	23	707	728	706	728	0.97
14	20	0.00012	0.0068	18.2	1.8	2	23	735	757	734	757	0.96
15	20	6.3	3.4e+02	3.4	0.2	2	9	768	775	767	787	0.84
16	20	2.5e-05	0.0014	20.4	1.4	1	23	793	816	793	816	0.97
17	20	9.8e-06	0.00054	21.6	0.4	3	23	827	847	826	847	0.99
18	20	0.0015	0.08	14.8	3.0	1	23	853	875	853	875	0.98
19	20	0.019	1	11.3	2.4	3	23	883	903	881	903	0.96
20	20	1.6e-05	0.00085	21.0	1.0	1	23	909	931	909	931	0.97

Sequence Information

Coding Sequence: ATGTGTCTACTGTTTAAAGATGATATGCTAGTTTTACATGTACCAGAAGTTACCCAAATGGTACGAATTTGTGTAGATATTGAGGTTCGTTTAAACGATGGATTTCCACAGACTATATGCACCGAATGTTTCAACCAGATGCATCAGTATTCAATATTTCGTCAACAATGTAAAAATTCTgatgaaattttacataaaattgttGATGACAGTAATGATGACGATAATTATGATGCGTTTGGTGATTCAAATCATTCAGTAGATAGTATCAAAGATGAGCTTCttgatagtaaaaataatttaaatttaatcactccctattcaaataaattaaaagattcCACGGAACCGGACGGTCCTGAtgtattaacaaaaaaagaatcgAGAGAAAATTCTGTTGATCAGGGACAAGATTTAAATAATCTCGATTTTCGTTCACCagacgaaaataaatttcatattaagAACGAGTATACTGACGATAGAGAGTTATTAAACGACAAAAGAGAAAAACGTTATAATAATTCAGAAAACGAACAAAAAGTTACTGTAAATTGTGAAGTTTGTAATAAATCGATTCCGAAAGCAAGACTCGAAAATCATTTACGTCGACATCGTCAAGAGAAGAAACATAAATGTGATCTATGTCCACGATCATTTAAAGTACCCTGTGAACTAGCAAAACATCTCGAAAATGCCCATCGCCGTAAAAAGACAATTGAATGTCAcgaatgtaataaaaaattttatttacaaattcaactcgacttacatttaaaatCACACTTTCGTTCAAAAAATAATCGCACATGTAATATTTGCGGCAAAATGTTAGCGGACAGTTACAAATTGCAACGACACAAAAAAATCCAcgaaaatcgagaaaaaatcgattgtttaTATTGCGACAAAACATTTTTAACCGAAGCGTCGTTAAAATTGCACGTCAAACGTTATCATAATCCGGAATCGAATGGTAAAGAACCGTGTCCGATTTGTGGAAAAGCCGTACTCAACATCAAAGTTCACACGATGCAAACGCACGACACGGAGAAACGATTTAAATGCGACCAGTGTAATCAAggctttatttttaattcgaaattaaTGAAACATATCCGAGAAAAACATTTAGGCATCAAAAAAGAGCAAAAACAAATCGAGGCGTTATGTCCCGTCTGTGGAAGAGTTTGTCGAAGTCAAAATTTACTTCAAAAACATCTCGTAACACACGACGAAACGCGAAAATACGATTGCCATTTATGTAGTAAAACGTATATATCTAAGGATGGTTTACGAAGTCACTTAATGGTACATAAAGGCATACGTCCATTCAGTTGCTCAACTTGTTCAAAACGATTCTTTGCAAAGAAACATCTAAAACATCATATATTGATACATACAGGGGAAAGACCATTTGCATGCCATATTTGTGGACGgagatttaatcaaaaatcggCCAGGCGAACGCATATGAAAattcGATTAAACGATGGATTTCCACAAACCATATGCTGTGAATGTTCTGATCAGATATACAAATATGCAGCTTTTCGTCAACTTTGTAAGAATTCTgatgaaattttacataaaatagtTAATGATGGTGAAAATGGTTCACTAAAAAATACTACTCAAGAAACTCTATTTATCTTGACAAATGACTCAAATGTTAAAAACGAGTTTGTGGAATCTATAAAAGTCGAACCTATCGATAATGAGTTCAGCGCAAAACATTTGGCATCTATTCACGAAATAAATGAAGACCATGGTCCTTCAGAGACTAATTTGTtggaaaaaaaagaattgaggaACACGTCTGAAGATGATAATTCATTTCAAGGGGAAAACCAATCtttagaaagaaagaaaattaaagcagtaaataaatcaaattttgaaaataaacttgaAAATCATACGGAACGACGCCATTTTGAAAAGAAACATAAATGTGATCAGTGTCCCAAATCATTCGAAAAACCCTGTGAATTAGCAAAACACTTACAGAGCACACATAAAAGAAAAGCAGATCTTAAATGCCAAACATGTAACAAACAATTTCATTTACAAATACAACTAGACTTACATCTAAAATCCCATTTAACAAAAGACAAAACTTGTAACACGTGCGGTAAAGAATTCACAGACAATTCAAATTTACGACGTCACAAAAAGATCCACGGAAAACGagaaacaatttattgtgtTCATTGCGGTAAAACGTACATGAATGAGGAATACTTAAAACGGCACATAAAACGTAGCCATAGCACAGAATCGAGCGCCAAAGATAAAAAAATGTGCCCCATATGTGGAAAAGTCGTCCTAAACGTAAAAATTCACACAATGCGCACACACGACAAACACAAACCGTTCAAGTGTACGCAATGTAACAAATCGTTCATTTTTAACGCCTTACTTGTTAAACATATCCGCGAGAAACATTTAGGCGTCAAAAAGGAAACGAAAGCTCTCTGTCCAGTTTGCGGGAAAGCTTGTCCAACGCAGGGTGATTTACGAAAACATTTAATGACACATGATGAAAGTCGAAAATACAATTGCCACTTGTGTAGTAAAACGTACAAGTATAAATTGGGTTTACAAAATCATTTAATGGTACATAAGGGAATACGACCGTACGGTTGCTCATCTTGTACAAAACGGTTCTTTTCGAAACAACAGTTGGAACATCATGTACTAATTCATACCGGGGAACGACCATTCGCTTGTCAGATTTGTGGACGTCGATTTAATCAGAAATCCGCCAGGCAAACACATATGAAAGTTCATAATGTGtga
Protein Sequence: MCLLFKDDMLVLHVPEVTQMVRICVDIEVRLNDGFPQTICTECFNQMHQYSIFRQQCKNSDEILHKIVDDSNDDDNYDAFGDSNHSVDSIKDELLDSKNNLNLITPYSNKLKDSTEPDGPDVLTKKESRENSVDQGQDLNNLDFRSPDENKFHIKNEYTDDRELLNDKREKRYNNSENEQKVTVNCEVCNKSIPKARLENHLRRHRQEKKHKCDLCPRSFKVPCELAKHLENAHRRKKTIECHECNKKFYLQIQLDLHLKSHFRSKNNRTCNICGKMLADSYKLQRHKKIHENREKIDCLYCDKTFLTEASLKLHVKRYHNPESNGKEPCPICGKAVLNIKVHTMQTHDTEKRFKCDQCNQGFIFNSKLMKHIREKHLGIKKEQKQIEALCPVCGRVCRSQNLLQKHLVTHDETRKYDCHLCSKTYISKDGLRSHLMVHKGIRPFSCSTCSKRFFAKKHLKHHILIHTGERPFACHICGRRFNQKSARRTHMKIRLNDGFPQTICCECSDQIYKYAAFRQLCKNSDEILHKIVNDGENGSLKNTTQETLFILTNDSNVKNEFVESIKVEPIDNEFSAKHLASIHEINEDHGPSETNLLEKKELRNTSEDDNSFQGENQSLERKKIKAVNKSNFENKLENHTERRHFEKKHKCDQCPKSFEKPCELAKHLQSTHKRKADLKCQTCNKQFHLQIQLDLHLKSHLTKDKTCNTCGKEFTDNSNLRRHKKIHGKRETIYCVHCGKTYMNEEYLKRHIKRSHSTESSAKDKKMCPICGKVVLNVKIHTMRTHDKHKPFKCTQCNKSFIFNALLVKHIREKHLGVKKETKALCPVCGKACPTQGDLRKHLMTHDESRKYNCHLCSKTYKYKLGLQNHLMVHKGIRPYGCSSCTKRFFSKQQLEHHVLIHTGERPFACQICGRRFNQKSARQTHMKVHNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -