Basic Information

Insect: Brachynemurus nebulosus
Gene Symbol: -
Assembly: GCA_035578155.1
Location: JAPWDM010000005.1:1349647-1355457[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.18 9.9 8.2 2.8 1 22 166 187 166 187 0.88

2 15 0.001 0.056 15.3 2.2 1 23 237 259 237 259 0.97

3 15 6.1e-07 3.3e-05 25.4 0.6 1 23 264 286 264 286 0.98

4 15 8.2e-06 0.00045 21.9 0.8 1 23 292 314 292 314 0.98

5 15 0.00018 0.0097 17.7 2.6 1 23 393 415 393 415 0.98

6 15 3e-06 0.00016 23.3 5.7 1 23 421 443 421 443 0.98

7 15 5.4e-07 2.9e-05 25.6 0.8 1 23 449 471 449 471 0.99

8 15 0.00016 0.0086 17.9 8.2 1 23 477 499 477 499 0.98

9 15 3.1e-06 0.00017 23.2 3.5 1 23 505 527 505 527 0.99

10 15 4.6e-06 0.00025 22.7 0.4 1 23 533 555 533 555 0.99

11 15 0.00063 0.034 16.0 2.2 3 19 563 579 561 581 0.95

12 15 0.0051 0.28 13.1 1.0 1 23 589 611 589 611 0.91

13 15 2e-05 0.0011 20.6 9.1 1 23 617 639 617 639 0.97

14 15 1.2e-05 0.00065 21.4 3.6 1 23 645 667 645 667 0.99

15 15 4.6e-06 0.00025 22.7 1.6 1 23 673 695 673 695 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.18	9.9	8.2	2.8	1	22	166	187	166	187	0.88
2	15	0.001	0.056	15.3	2.2	1	23	237	259	237	259	0.97
3	15	6.1e-07	3.3e-05	25.4	0.6	1	23	264	286	264	286	0.98
4	15	8.2e-06	0.00045	21.9	0.8	1	23	292	314	292	314	0.98
5	15	0.00018	0.0097	17.7	2.6	1	23	393	415	393	415	0.98
6	15	3e-06	0.00016	23.3	5.7	1	23	421	443	421	443	0.98
7	15	5.4e-07	2.9e-05	25.6	0.8	1	23	449	471	449	471	0.99
8	15	0.00016	0.0086	17.9	8.2	1	23	477	499	477	499	0.98
9	15	3.1e-06	0.00017	23.2	3.5	1	23	505	527	505	527	0.99
10	15	4.6e-06	0.00025	22.7	0.4	1	23	533	555	533	555	0.99
11	15	0.00063	0.034	16.0	2.2	3	19	563	579	561	581	0.95
12	15	0.0051	0.28	13.1	1.0	1	23	589	611	589	611	0.91
13	15	2e-05	0.0011	20.6	9.1	1	23	617	639	617	639	0.97
14	15	1.2e-05	0.00065	21.4	3.6	1	23	645	667	645	667	0.99
15	15	4.6e-06	0.00025	22.7	1.6	1	23	673	695	673	695	0.98

Sequence Information

Coding Sequence: atgactcacgaaaatatatcaaatgaagatttacaaaatatttgtcGAATTTGTTTGCAACGTTCCGAAGATTGGATTGATTTGTTTTCCCCCACAGCTGGATTTTCAATGATTTCGGAAGCAGTAATGGAATGTGCTCCAATACAattaCATACCTTAATTGCATCGAAATATTTACAGATCTCATTCGACGATAATCTACCACATACAATATGTCAGGATTGTGTCACTCAACTGGAGATTGCGTACCGTTTTCGGATACTTTGCATGCAATCTGATCTCATATTACACCAGTTAGTGTCACAAATTGATAATGAAGAAGAATTTAAAGACAGTggatcagtaaattttaatggaaatgaaactgaaaatgaaataaaagaagaaGTCCCTACCGGTGATTCCGATAATGATGTAAAATCATTAGACAacttttttaatgacacaactgaACAACCGTCACCTAAACCACTAACTGCAAGGAAAACACGGCCCTATATTTGTATTAAGTGTTTGTCAAGATTCACACGAAAATATCACCTTCAGCAACACCAAAAACGTTGTTTAGTCGGAAAAATTAAGCGGAAAAAAATGAAAGACGATTCCGAGGAAGTAGAAGTGAAGGAGGAAGACTTTAAACCGATTAAACCGAATATCAAACCATACGCGACATTTAAAGATAACATTATTTTGGATGAAAATGGACGATACTCTTGCGGCATTTGTAAGAAAACCTATAAGAGTAAATATCATACCGCGAGACATGCAATCGTTCACAGTGACATTCGATATAATTGCCCACATTGTGATAAGAGTTTTGTTCGACCAACCAGTCTGTCGGAACACATCAATGTCCACACAGGCAAACGGATGTATAATTGTGAATTTTGCGGTAAAATATTTCGTACAGATTCAGCGTTGAATACACATCGACGAATTCATCTTCCTACCGGCGAAAATGAGTAtaagcttaaaaatgaaaatgtagaTGCAGTAGAAGATGAATTAAACATTGAAAATGAATATTCTGAAAATGATAATAGCCAAGATACAAAAGAAAATtctggaaaaaagaaaaatcagtcCGTACGACGAATTCTTTGCTCCGTATGTGGCAAATTGATTGTTGCTGGCCATAAAAATGTTCACATGAAAATTCACGCTGAGCAAAAACCGTATCAGTGTACTGTATGTGAACACAAATTTACTCTTGCAGGAACTTTACGTCGACATATGACGAGGCACACTGGTGAACGTCCGCATCAGTGTAACACTTGCGGTAAATGTTTCAGGGAATTACCTTCTCTCAAACGACATATGAGAACTCACACAGGAGAAAAACCTTACGAATGTTCAAACTGTGGACTAAAATATAGTACTGCACCAAATTTACGTCGACATATGAGGAAGCACACTGGTCAACGTCCGCATCAGTGTAACACCTGTGGTAAATGTTTCAGGGAAGTTCAACATCTCAGACAACATTTGAGAACTCACACAGGAGAAAAACCTTACGAATGTTCAAACTGTGGGCGAAAATTCAGCTACAAGCAAAACCTGCACTTACATATGAGGATCCACACCGGTGAGCGGCCCTATCAATGTAACATCTGCGACAAAGACTTCACCCAGTTAGGAGCACTGAAAGAGCACAAACTTACACATACAAGTGAGACGCCATATGGATGCAATAAATGTGGGAAGCGATTTAAAAGTAGATCTGGATTAAATAATCATGGATGTTGTGACACAGACGGTAAACCTTACACTTGTGAACAGTGTAATTTATCCTTTTCGAGATCGGAGTTACTTAAGTTCCATAGTCTCATTCACACTGGGGAAAAACCATATAATTGTCACATCTGTAATAAGAAATTCAGACGGAGTTCACACTTACAAAGGCATTTACATCTCCATAGCGGGATTAAACCATTTAGATGCACTTTTTGTAATAAATGTTTTGCACTGAACGCGAATTTAAAGGTTCATATTAGAAGGCATACTGGTGAAACACCGTTTGAATGTTCGGTTTGTGGACGAGGGTTTTATGATTCTAGTAGCATGAAGAAACATAAACGCACGCATAAAGAATAA
Protein Sequence: MTHENISNEDLQNICRICLQRSEDWIDLFSPTAGFSMISEAVMECAPIQLHTLIASKYLQISFDDNLPHTICQDCVTQLEIAYRFRILCMQSDLILHQLVSQIDNEEEFKDSGSVNFNGNETENEIKEEVPTGDSDNDVKSLDNFFNDTTEQPSPKPLTARKTRPYICIKCLSRFTRKYHLQQHQKRCLVGKIKRKKMKDDSEEVEVKEEDFKPIKPNIKPYATFKDNIILDENGRYSCGICKKTYKSKYHTARHAIVHSDIRYNCPHCDKSFVRPTSLSEHINVHTGKRMYNCEFCGKIFRTDSALNTHRRIHLPTGENEYKLKNENVDAVEDELNIENEYSENDNSQDTKENSGKKKNQSVRRILCSVCGKLIVAGHKNVHMKIHAEQKPYQCTVCEHKFTLAGTLRRHMTRHTGERPHQCNTCGKCFRELPSLKRHMRTHTGEKPYECSNCGLKYSTAPNLRRHMRKHTGQRPHQCNTCGKCFREVQHLRQHLRTHTGEKPYECSNCGRKFSYKQNLHLHMRIHTGERPYQCNICDKDFTQLGALKEHKLTHTSETPYGCNKCGKRFKSRSGLNNHGCCDTDGKPYTCEQCNLSFSRSELLKFHSLIHTGEKPYNCHICNKKFRRSSHLQRHLHLHSGIKPFRCTFCNKCFALNANLKVHIRRHTGETPFECSVCGRGFYDSSSMKKHKRTHKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -