Bneb008276.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000001.1:164652261-164666878[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0051 0.28 13.1 0.5 1 23 159 182 159 182 0.98 2 14 2.3e-05 0.0012 20.5 2.8 1 23 187 209 187 209 0.98 3 14 0.0022 0.12 14.3 2.6 2 23 212 233 211 233 0.95 4 14 1.9e-05 0.0011 20.7 0.8 1 21 239 259 239 260 0.94 5 14 0.0002 0.011 17.5 0.3 1 23 377 400 377 400 0.93 6 14 5.6e-05 0.003 19.3 0.6 1 23 405 427 405 427 0.99 7 14 0.0021 0.11 14.3 1.0 1 23 429 451 429 451 0.97 8 14 2e-07 1.1e-05 27.0 1.6 1 23 457 479 457 479 0.98 9 14 1.9e-05 0.001 20.8 1.5 3 23 487 507 485 507 0.96 10 14 8.2e-06 0.00045 21.9 0.5 1 23 513 535 513 535 0.98 11 14 1.3e-07 7e-06 27.6 1.1 1 23 541 563 541 563 0.97 12 14 1.9e-06 0.0001 23.9 0.3 1 23 569 591 569 591 0.98 13 14 4.9e-08 2.7e-06 28.9 2.3 1 23 597 619 597 619 0.98 14 14 0.0003 0.016 17.0 2.3 1 23 625 647 625 647 0.98
Sequence Information
- Coding Sequence
- ATGGAATCAAATGTGAATGCTCAAATATACGAAAATATTTGTCGTACTTGTTTCGTTCACAGTGAAAATAACAAGTCTATTTTTAGTCGTGAAACTGATTCAATACCCTTAGCAGAAATATTAAAAGATTGTACTTCTGTGGAAGTGTTACCAGATGATCATTTACCAAAAGTTATTTGTGCAGATTGTAGAGATCgtattatttcatattataattttaaaattcaatgtTTGGAAACAGAGAAAAAGTTAACCAAAATTTATTGTCAACTAATTAAAGATAATTCAGAAagtaattttaatgaatatgaAAATTCAACATTAGATCACAATTATTATTCAGAGGATGAGACTAAAAATGAGTTGTTTGAAGATTCTAAAAgcgaaattaaattaaatgaacaaaataaaaccaGTGATAAACCAAAAGTTAAAAAATCTAGAAAAACAAGTCAAGTGCcatctaataatttatttaaatgtgaaGAATGTGATATAGACTGTATATCAAAATTAGCATTGGATGCACATATTAGGAGATTTCATTCGCAACGCAAATACAAATGTGAACaatgtaataaatgttttattcaaCGAGGGTCGTTATTGAATCATCAACTGTTGCATGGACTTTGTTGtaaaatatgtttcaaaaattttgatacgCAGGATGAATTAAATGAACATAAACAAGAACATAAAGAGGatgatatttttgtttgtaaagaTTGCGGGAAACAGTTtcattcaaaatcaaatttgatGATTCACAATCGGatatcagtcacagacaattTACCGAAAGGGATATGTGAAATTTGTATAGATCAAGtaaataacaattataaatttCGAAAGCAGTGTTTAttgtccgaaaaaaaattattaaatatatttaacacaCCATGCAAAGAAGAGAACAATATAAATGATACAGATTGCAATGATCCAGAAGTAAAATGCGAAACACCCGACGACAACTATTACCCAGAAGATGACGAAGGagaatacaataattatttagacgttaaaatcgaaattaaaaCGGACGATGATGATATAGAAGAAGAAATTCGACCGAAACGAAAATATAAAGAACGAACACGAAATTCGGAGAAAGCGGACCAATTTAAATGCGATGAATGTGAAATCACGTTTACATCGAAAACGGAACTGGCCGTTCACACCGAGGagaaacatttatataaaaaatataaatgtaatgaaTGTGGAAAAGGTTTTAAGGCAATCGGTTACTATAATAATCATATGTTAAAGCATGGTTACAATTGTAAAACATGTTTCCGAAAATTTGAGACGGCCGCTGAACTAGAAGAACACAAAAAAGAACACACGAATTTGGATTGTTTCGTTTGTCAAGATTGTGGCAAAGAATTCAAGAGGaagattaatttgaaatatcacattaagACGCACACAGGAGAAAAGCCACATCTCTGTACTTTTTGCGGAAAAACGTTTGCATTACAAGGAAATCTGAATACTCATTTACGAATTCATAATGGTGTTAAACCCTATTCATGTAGTTATTGTCcGAAAGAGTTTGTACAATGGTCTTCCTGGaaaacacatttaataaaaCACAGACGGGAAAGTATGTTCGATTGTCCAAAATGTGGAAAAACATTTCCTCGAAAAGGAACGTTAAGACTTCATATGAAAAGACATTTAGATATTCGACAGTACGTTTGTAATTTATGCCCGAAACAGTTCAAAACTGCGTCAGATTTGAAGACGCATGTTAACATACACacagGTGAAAAGAATTTCACATGTACATATTGCGGTAAAAGTTTTAATCGGCAGAGTACATTAACAGTTCATAGACGAATTCATACCGATGAGAGACCGCATGTATGTCAGATATGTGAACGTGGCTTTATACAACGTCACGTTTTGATTCAACATATGAAAACTCATAAAACGACtgaataa
- Protein Sequence
- MESNVNAQIYENICRTCFVHSENNKSIFSRETDSIPLAEILKDCTSVEVLPDDHLPKVICADCRDRIISYYNFKIQCLETEKKLTKIYCQLIKDNSESNFNEYENSTLDHNYYSEDETKNELFEDSKSEIKLNEQNKTSDKPKVKKSRKTSQVPSNNLFKCEECDIDCISKLALDAHIRRFHSQRKYKCEQCNKCFIQRGSLLNHQLLHGLCCKICFKNFDTQDELNEHKQEHKEDDIFVCKDCGKQFHSKSNLMIHNRISVTDNLPKGICEICIDQVNNNYKFRKQCLLSEKKLLNIFNTPCKEENNINDTDCNDPEVKCETPDDNYYPEDDEGEYNNYLDVKIEIKTDDDDIEEEIRPKRKYKERTRNSEKADQFKCDECEITFTSKTELAVHTEEKHLYKKYKCNECGKGFKAIGYYNNHMLKHGYNCKTCFRKFETAAELEEHKKEHTNLDCFVCQDCGKEFKRKINLKYHIKTHTGEKPHLCTFCGKTFALQGNLNTHLRIHNGVKPYSCSYCPKEFVQWSSWKTHLIKHRRESMFDCPKCGKTFPRKGTLRLHMKRHLDIRQYVCNLCPKQFKTASDLKTHVNIHTGEKNFTCTYCGKSFNRQSTLTVHRRIHTDERPHVCQICERGFIQRHVLIQHMKTHKTTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -