Basic Information

Insect: Brachynemurus nebulosus
Gene Symbol: -
Assembly: GCA_035578155.1
Location: JAPWDM010000003.1:13794205-13800936[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 29 0.0033 0.18 13.7 0.4 3 20 142 159 140 161 0.92

2 29 0.0013 0.069 15.0 0.8 1 23 167 190 167 190 0.97

3 29 0.029 1.6 10.7 0.3 1 23 198 220 198 220 0.95

4 29 0.055 3 9.9 1.3 3 23 240 260 238 260 0.93

5 29 0.00066 0.036 15.9 0.5 1 23 266 288 266 288 0.98

6 29 0.37 20 7.3 0.6 3 23 295 316 294 316 0.96

7 29 0.0044 0.24 13.3 0.9 1 23 325 347 325 347 0.97

8 29 0.039 2.1 10.3 3.0 1 23 352 374 352 374 0.98

9 29 3.8e-05 0.002 19.8 0.2 3 23 380 400 379 401 0.96

10 29 0.0011 0.061 15.2 1.6 2 23 408 429 407 429 0.97

11 29 3.6e-05 0.002 19.9 0.1 1 23 435 457 435 457 0.98

12 29 0.015 0.8 11.7 6.6 1 23 463 487 463 487 0.97

13 29 7.9e-05 0.0043 18.8 2.1 1 23 493 515 493 515 0.98

14 29 0.0045 0.25 13.3 7.1 1 23 521 544 521 544 0.94

15 29 0.02 1.1 11.2 1.7 3 20 731 748 729 750 0.91

16 29 0.019 1 11.3 1.2 2 20 899 917 898 919 0.92

17 29 0.00047 0.026 16.4 1.7 1 23 925 948 925 948 0.97

18 29 0.046 2.5 10.1 0.4 2 23 957 978 956 978 0.94

19 29 0.56 31 6.7 1.9 3 21 998 1016 996 1018 0.83

20 29 0.00015 0.0083 17.9 1.1 1 23 1024 1046 1024 1046 0.98

21 29 1.2 67 5.6 1.9 1 23 1051 1074 1051 1074 0.97

22 29 0.022 1.2 11.1 0.3 2 23 1084 1105 1083 1105 0.96

23 29 0.013 0.7 11.8 2.5 1 23 1110 1132 1110 1132 0.97

24 29 0.00022 0.012 17.4 3.3 3 23 1138 1158 1135 1159 0.94

25 29 0.0064 0.35 12.8 0.5 2 23 1166 1187 1165 1187 0.96

26 29 6.3e-05 0.0034 19.1 0.9 1 23 1193 1215 1193 1215 0.98

27 29 0.016 0.89 11.5 3.8 1 23 1221 1245 1221 1245 0.96

28 29 0.00084 0.045 15.6 0.4 1 23 1251 1273 1251 1273 0.98

29 29 0.00037 0.02 16.7 6.8 1 23 1279 1302 1279 1302 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	29	0.0033	0.18	13.7	0.4	3	20	142	159	140	161	0.92
2	29	0.0013	0.069	15.0	0.8	1	23	167	190	167	190	0.97
3	29	0.029	1.6	10.7	0.3	1	23	198	220	198	220	0.95
4	29	0.055	3	9.9	1.3	3	23	240	260	238	260	0.93
5	29	0.00066	0.036	15.9	0.5	1	23	266	288	266	288	0.98
6	29	0.37	20	7.3	0.6	3	23	295	316	294	316	0.96
7	29	0.0044	0.24	13.3	0.9	1	23	325	347	325	347	0.97
8	29	0.039	2.1	10.3	3.0	1	23	352	374	352	374	0.98
9	29	3.8e-05	0.002	19.8	0.2	3	23	380	400	379	401	0.96
10	29	0.0011	0.061	15.2	1.6	2	23	408	429	407	429	0.97
11	29	3.6e-05	0.002	19.9	0.1	1	23	435	457	435	457	0.98
12	29	0.015	0.8	11.7	6.6	1	23	463	487	463	487	0.97
13	29	7.9e-05	0.0043	18.8	2.1	1	23	493	515	493	515	0.98
14	29	0.0045	0.25	13.3	7.1	1	23	521	544	521	544	0.94
15	29	0.02	1.1	11.2	1.7	3	20	731	748	729	750	0.91
16	29	0.019	1	11.3	1.2	2	20	899	917	898	919	0.92
17	29	0.00047	0.026	16.4	1.7	1	23	925	948	925	948	0.97
18	29	0.046	2.5	10.1	0.4	2	23	957	978	956	978	0.94
19	29	0.56	31	6.7	1.9	3	21	998	1016	996	1018	0.83
20	29	0.00015	0.0083	17.9	1.1	1	23	1024	1046	1024	1046	0.98
21	29	1.2	67	5.6	1.9	1	23	1051	1074	1051	1074	0.97
22	29	0.022	1.2	11.1	0.3	2	23	1084	1105	1083	1105	0.96
23	29	0.013	0.7	11.8	2.5	1	23	1110	1132	1110	1132	0.97
24	29	0.00022	0.012	17.4	3.3	3	23	1138	1158	1135	1159	0.94
25	29	0.0064	0.35	12.8	0.5	2	23	1166	1187	1165	1187	0.96
26	29	6.3e-05	0.0034	19.1	0.9	1	23	1193	1215	1193	1215	0.98
27	29	0.016	0.89	11.5	3.8	1	23	1221	1245	1221	1245	0.96
28	29	0.00084	0.045	15.6	0.4	1	23	1251	1273	1251	1273	0.98
29	29	0.00037	0.02	16.7	6.8	1	23	1279	1302	1279	1302	0.96

Sequence Information

Coding Sequence: ATGATTATGGAGTGTACTTCAGTTGTTGTCGAAAAAAATGATGGCTTTCCAGAATATATTTGTTCCGACTGCTCGCAACAGTtagtaaattattattgttttaaacatagtaatttgccagatataaaaattgaaaatgaaaatcaaGTAAATGAATTAGATATCACAGAAAAAATAACTCATAATGAAAATCAGCTATTAAAAAACAAAGGATTTATATGTAAAGATGAAATCGACGAATTTTATTGGGATGCAAATGAAGTGGAAGATAATGTTGCACCAGAATCAAAAGAAGGTGTCACGTCAGAATTAGATGAACGTGATGTCGCAAAGTCAATTGAAAACATTCCAAAAGATACCACGGAAATTAAATCAGAATTAAAAACGTGTGCGTCAATTGATGATAGTTCATCAGCCATCGCATGCCCTTATTGTTTGAGAAaattcaaaagtaaaaaaaatctcaatttACACGAAAATTACtgtaagaaaataaatttcaactGTGATCGGTGTTCTGAAAACTTTCCCAGTCAATCTCTACTCAATACACACTTGACAACATCCCATGGAGAAATGCCCTCGCCACTTTTTACCTGTGATATTTGCAATGGtgatttcaaagaaaaatcattattaattgaacatttttatattcACATCGAAACCTCGTTGTACTTCAATTATGATTTTGAGAATAATACAGAGATACATTTATGTTATGCTTGTGACAAAAATTTTGCTTCATCCCCGAAACTAATTAAGCATTATGATCGACACAGTCAGAACAAagattatcgatgtcgaaagtGTAACGAAGCCTTCGAAGATATTGGTTTATTCAAAAAACACATAAGAGGACATGGGATTCTGCCGAACTTCTGTGATCTGtgtcttttaaattttgatagttTAAGACAACTGCAAATGCATCAAAAATATCCACATAAATATTCAGTAGCTAAAGATTTATTTAACTGTCCACTCTGTGAAGAAAATTTTAAGGATCTATTTAGGTTGAAAAATCACTTGAAAGAGCATAAAAGtgatttatataaatgtttagtTTGTTTTAAATCCTGCAATTCAATTGCTGAACTTAAAAATCATAAGAAGGAACATAATGTGTGCAGTTTATGCCCCGATTGTGGGAAACAATTCCCTCGGGCGTTGTCTTTGTACGCTCATATTCGAGTACATCACATGAAAATGACTCAAGTCACCTGTGACGTATGTAACAAGACGTATCATTCGGCACAAAGCTTGAAAGTTCACAAACGAATTCACACAAAGGAAAAACCGTACATTTGTTCGTATTGTCCATATCGTACAAGACAACCGGGTGACCTGAAAGTGCATATACGTGTACACACCGGCGAAAAGCCTTATACTTGTAGATTTCCAAACTGTGGTCAACGATTTAAAACGTCCAGTCATCGAAACGAGCATCATCGTACGCACGTCGGCGAACGTAATTATGAATGTACAATATGTAACATGAAATTCGTGAAGTCAGGATGTCTtcggaaacatatgttaatacaTTCGGATAAAAGGGAGCATGAATGTAATATCTGTTATAAACAATTTCGACGTAGATATCATTTAACAAATCATAAATTTAGAGTTCACGCATCGATAAATAAATCTTCCATTTGGGACACAATAATTGTGAAAGATAATGGTAACATTCAATTTGCAGAAATGATTATGGAATGTACTACGGTTATTgTGGAAGAAGATGACGAATTGCCAAAATACATTTGTTTCGACTGTTCCCAACAGTTAGAAAATGCATATTGTTTTAAACATCGGTGTGAAAAATCGGATACAAAATTGaaacaaatatttgaaattctgaAAGCAACTGGTGAATcctgtaaatatattttaatcgaaaatcccggtaatttgtcaaatttaaaggttgaaaatgaaaatcaagaaaatgaTTTAGGAACCATCGAAGAAATAATACAGAACAAAAATGAGCTATTAAAAAATGGAGAATTTATACCAAAAACTGAGAAATTAGATGAAATAGaagagatttttttaaatgtaaataaagcTGAGGATGTCACGTCAGAATCAACGGAAGATAATACCGACGGATCAAATAAAGTCCCTAAAAAATCTACTGAAATCAAATCAAAGTTGGAAGTGGATAATTTTTCATCTGGCACAATTTGCCCTTATTGttcaaaaagatttaaaaatgaaaagaatcgTACCCATCACGAAAATTACTGCGAAAAACGAACTTCAGCCGGTAAAGAATATTCTTTGTCTGCGAATGAATCAGAAGATTTTGCACAAGAATCGGGTGAAGATGTTACACCAGAATCAGATGACGATGATATACCAGAATTAAATGAAAACCTTTCCCAAAATGCCCTTAAAATTGAACCACAGTTGAAAACGTCAGTTAATGATTTTGCGTGGGGCATTATTCGTCCTCATAGTTTGAGAACATATAAGGGCAAAAAAAGTAGCTTCATACACGGAAATTACCGTGAAAAACCAACTTCCACTGATAAAGAATACTCTCTGAGTGTAAATGGAATCGACGTTGTACCGGAAACAACTGAATGTGTTACGCCTCGTCCTCAGTCAAAGGAAAACCTTCCTAaaagtgtaaataaaattgaattgaaattaaaaaggcCAGTTAACGATTTTTCATCAGCTCTTACTTGTCCATACtgtttaagaaaatttaaaagtaaaatgagTCTCACTTTACATGAAAATCACTGTCAAAAGGAGACCTTCAATTGTGGTCAGTGTTCTGAAACTTTTCCACATCAGTCCTTACTCAATTCACATTTGTCAACAACGCATGGAGAAGCGCCTGCGCCACTATTAACTTGTGATATCTGTAGTGATAATTTCAAAGACAAATCGTCACTAATCGAACATTTTTACGTTCATATCGAAACCTCATTATACTTTAATTATGATTTTGATGGTAAAAGTGAAACATATTTATGTTATccttgtaacaaaaatttttcttcagcCCAGCAATTAATTAAACATTGTAATGAACACAGTCAGAGTAAagattatcgatgtcgaaagtGTAACGAAGCCTTCGAGGAATATAGTCTCTTAAAAAAACACATAAGAGAGCATGGAATTCTACCATACTTTTGCGATAAATGTCTCTTAAATTTTGATAGTGTAAGGAAAATGCAACTACACCAAAAAACGCAacatttgtatttaacaattaaaGATACATTAGAATGTCCACTCTGTGAGGACGTTTTTAAGGATTtgtttaagttaaaaaatcacTTGAAAGAACATAAAGCCGATCTATATAaatgtttagaatgttttaaaTCATACAAGTCAATTGATGAATTCAATAATCATAAAAAAGATCATAATGTTTGCAGTTTATGTTACGATTGTGGGAAACAGTTTCCACGGACGTCGTCCTTGGACAAACATATACGCGTACATCACATGAAAATGACTCAAGTCACATGTAACGtatgcaataaaatattacgttcgaaaaaaaatttggacgTTCATAAACTGATTCACACCAAGGAAAAACCTTACAGTTGCTCGTACTGTCCATATCGTACGATACAATCGCAAGACTTGAAAAAACATATTCGTATACACACCGGTGAGACGCCGTATGCGtgtaaatttccaaattgtgatcaaaaatttaaaacatctagCAATCGAAACGAGCATCATCGACAACACACGGGTGAACGCAATTATGAATgcaaaatatgtaaaatgaaATTCGGCAAGTCGGGAGTTCTTCGGAATCATATGTTAATACACTCTAATAAAAAGGAACATAAATGTGGTGTTTGTGGCAAGCAGTTTCGACGTAAACATCATTTAACAATACATAAATTGAAGATTCATGGAATATCAAAtgttaaatgtaataaaatttaa
Protein Sequence: MIMECTSVVVEKNDGFPEYICSDCSQQLVNYYCFKHSNLPDIKIENENQVNELDITEKITHNENQLLKNKGFICKDEIDEFYWDANEVEDNVAPESKEGVTSELDERDVAKSIENIPKDTTEIKSELKTCASIDDSSSAIACPYCLRKFKSKKNLNLHENYCKKINFNCDRCSENFPSQSLLNTHLTTSHGEMPSPLFTCDICNGDFKEKSLLIEHFYIHIETSLYFNYDFENNTEIHLCYACDKNFASSPKLIKHYDRHSQNKDYRCRKCNEAFEDIGLFKKHIRGHGILPNFCDLCLLNFDSLRQLQMHQKYPHKYSVAKDLFNCPLCEENFKDLFRLKNHLKEHKSDLYKCLVCFKSCNSIAELKNHKKEHNVCSLCPDCGKQFPRALSLYAHIRVHHMKMTQVTCDVCNKTYHSAQSLKVHKRIHTKEKPYICSYCPYRTRQPGDLKVHIRVHTGEKPYTCRFPNCGQRFKTSSHRNEHHRTHVGERNYECTICNMKFVKSGCLRKHMLIHSDKREHECNICYKQFRRRYHLTNHKFRVHASINKSSIWDTIIVKDNGNIQFAEMIMECTTVIVEEDDELPKYICFDCSQQLENAYCFKHRCEKSDTKLKQIFEILKATGESCKYILIENPGNLSNLKVENENQENDLGTIEEIIQNKNELLKNGEFIPKTEKLDEIEEIFLNVNKAEDVTSESTEDNTDGSNKVPKKSTEIKSKLEVDNFSSGTICPYCSKRFKNEKNRTHHENYCEKRTSAGKEYSLSANESEDFAQESGEDVTPESDDDDIPELNENLSQNALKIEPQLKTSVNDFAWGIIRPHSLRTYKGKKSSFIHGNYREKPTSTDKEYSLSVNGIDVVPETTECVTPRPQSKENLPKSVNKIELKLKRPVNDFSSALTCPYCLRKFKSKMSLTLHENHCQKETFNCGQCSETFPHQSLLNSHLSTTHGEAPAPLLTCDICSDNFKDKSSLIEHFYVHIETSLYFNYDFDGKSETYLCYPCNKNFSSAQQLIKHCNEHSQSKDYRCRKCNEAFEEYSLLKKHIREHGILPYFCDKCLLNFDSVRKMQLHQKTQHLYLTIKDTLECPLCEDVFKDLFKLKNHLKEHKADLYKCLECFKSYKSIDEFNNHKKDHNVCSLCYDCGKQFPRTSSLDKHIRVHHMKMTQVTCNVCNKILRSKKNLDVHKLIHTKEKPYSCSYCPYRTIQSQDLKKHIRIHTGETPYACKFPNCDQKFKTSSNRNEHHRQHTGERNYECKICKMKFGKSGVLRNHMLIHSNKKEHKCGVCGKQFRRKHHLTIHKLKIHGISNVKCNKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -